SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8337

Length: 320 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8337
AATGTGTCTTGATAATTTGGATTTGAGCTTTAATGGGCTTGTGGGTGGTATTCCCTCTCAGCTGCCACGGTCTCTATCTCAGCTGACTCTGAAATCAAATCTCTTGCGTGGGAACCTACCTCTGAGCTTGAGCAGTTTAAGTGAGTTGGGTGTTCTGGATGCGAGCATTAATAGGCTGAGTGGTGCCATTGATGGGTCTCTATTTGCTCATCCTTCTCTGCAGCAGCTGAATTTGTCAAATAATAGCATATAAGATTGCTGCACATGCTGCAGATTTAGCAAAAAGGCATCCATTTGCTCAAGAATGGGATGATGACATT

Ace file of the UniGene biog3_v1.0_unigene8337 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8583	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9R831_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	serine-threonine protein plant-	-	-	59%

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV54

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 112 aas, your sequence is shorter than subject: 84 - 428

Fln protein: MCLDNLDLSFNGLVGGIPSQLPRSLSQLTLKSNLLRGNLPLSLSSLSELGVLDASINRLSGAIDGSLFAHPSLQQLNLSNNSI*

Protein Length: 85

Fln nts: AATGTGTCTTGATAATTTGGATTTGAGCTTTAATGGGCTTGTGGGTGGTATTCCCTCTCAGCTGCCACGGTCTCTATCTCAGCTGACTCTGAAATCAAATCTCTTGCGTGGGAACCTACCTCTGAGCTTGAGCAGTTTAAGTGAGTTGGGTGTTCTGGATGCGAGCATTAATAGGCTGAGTGGTGCCATTGATGGGTCTCTATTTGCTCATCCTTCTCTGCAGCAGCTGAATTTGTCAAATAATAGCATATAAGATTGCTGCACATGCTGCAGATTTAGCAAAAAGGCATCCATTTGCTCAAGAATGGGATGATGACATT

Fln Alignment:

Contig8337___LDNLDLSFNGLVGGIPSQLPRSLSQLTLKXXXXXXXXXXXXXXXXXXXXLDASINRLSGAIDGSLFAHPSLQQLNLSNN
A9NV54_________________LNFLDVSDNQLSGPILAVVPPSLVQLSLRNNGLSGELRLNLAGMSMLQVLDLSHNKLSGPLPSGLFDHPALEQLTLSYN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
120		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain