SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8304

Length: 471 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8304
AATGTCATATAAAAGAGAATTATAAGTTTCAAAAAGATGGAAAGACTGGTCAGAGACAAGAGGATCCTGCTTTGGGCCTCAGACACATTGTTTCAGAAGCAAAGAAGACCCACAATTTAAAGTACATCTATGTTTGGCATGCTATCACTGGTTACTGGGGAGGAGTTAAGCCTGATGTTTCTGGAATGGAGCATTATAATTCAAAAATGTCCTTCCCTGTTGAACCTCATGGGATTCTTCATCACCAACCAGACGAGGCATTAGAATGCATAAAACTAAATGGATTGGGCTTAGTCCATCCCAAAAATGTGTTTCAATTTTATGACGATCTCCACTCGTATCTAGCAAGTGCTGGCATTAATGGTGTCAAAGTGGACGTCCAGAATATTATTGAGACGTTAGGTGCAGGGCATGGTGGTCGTGTTAAATTGGCCAGCCAGTATCATCAAGCAATGGAGGCTTCTATTGCTC

Ace file of the UniGene biog3_v1.0_unigene8304 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26601	7/8
SustainPine v2.0	sp_v2.0_unigene32813	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO	-	-	69%
FL-Next	sp=Probable galactinol--sucrose galactosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	alkaline alpha galactosidase i	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	sucrose biosynthetic process	GO:0005986	Biological Process	81%
Blast2go	mannitol biosynthetic process	GO:0019593	Biological Process	81%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	response to water deprivation	GO:0009414	Biological Process	81%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	81%
Blast2go	raffinose family oligosaccharide biosynthetic process	GO:0010325	Biological Process	81%
Blast2go	transferase activity	GO:0016740	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84VX0

Fln msg: Distance to subject end: 334 aas, your sequence is shorter than subject: 156 - 754

Fln protein: CHIKENYKFQKDGKTGQRQEDPALGLRHIVSEAKKTHNLKYIYVWHAITGYWGGVKPDVSGMEHYNSKMSFPVEPHGILHHQPDEALECIKLNGLGLVHPKNVFQFYDDLHSYLASAGINGVKVDVQNIIETLGAGHGGRVKLASQYHQAMEASIA

Protein Length: 157

Fln nts: AATGTCATATAAAAGAGAATTATAAGTTTCAAAAAGATGGAAAGACTGGTCAGAGACAAGAGGATCCTGCTTTGGGCCTCAGACACATTGTTTCAGAAGCAAAGAAGACCCACAATTTAAAGTACATCTATGTTTGGCATGCTATCACTGGTTACTGGGGAGGAGTTAAGCCTGATGTTTCTGGAATGGAGCATTATAATTCAAAAATGTCCTTCCCTGTTGAACCTCATGGGATTCTTCATCACCAACCAGACGAGGCATTAGAATGCATAAAACTAAATGGATTGGGCTTAGTCCATCCCAAAAATGTGTTTCAATTTTATGACGATCTCCACTCGTATCTAGCAAGTGCTGGCATTAATGGTGTCAAAGTGGACGTCCAGAATATTATTGAGACGTTAGGTGCAGGGCATGGTGGTCGTGTTAAATTGGCCAGCCAGTATCATCAAGCAATGGAGGCTTCTATTGCTC

Fln Alignment:

Contig8304___HIKENYKFQKDGKTGQRQEDPALGLRHIVSEAKKTHNLKYIYVWHAITGYWGGVKPDVSGMEHYNSKMSFPVEPHGILHHQPDEALECIKLNGLGLVHPKNVFQFYDDLHSYLASAGINGVKVDVQNIIETLGAGHGGRVKLASQYHQAMEASIA
Q84VX0_________________HIKENHKFQKDGKEGHRVDDPSLSLGHVITDIKSNNSLKYVYVWHAITGYWGGVKPGVSGMEHYESKVAYPVSSPGVMSSENCGCLESITKNGLGLVNPEKVFSFYNDLHSYLASVGVDGVKVDVQNILETLGAGHGGRVKLAKKYHQALEASIS

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
100		75		25	0.996473
112		25		75	0.996473
118		75		25	0.996473
125		25		75	0.996473
126	25		75		0.996473
134		75		25	0.996473
135	25		75		0.996473
140			75	25	0.996473
143	75		25		0.996473
144		25		75	0.996473
149	75		25		0.996473
157		25	75		0.996473
196	14		85		0.993533
203	14		85		0.993533
204		85	14		0.993533
213	14		85		0.993533
215	14	85			0.993533
217		71		28	1.0
220		83		16	0.994512
226		16	83		0.994512
228			16	83	0.994512
255		16	83		0.994512
256	16		83		0.994512
257			83	16	0.994512
258	83			16	0.994512
260		20	80		0.995493
265	20			80	0.995493
280			85	14	0.993533
292	85			14	0.993533
305	85	14			0.993533
329	85		14		0.993533
344	14		85		0.993533
348	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain