SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8213

Length: 518 nt

UniGene Fasta

>biog3_v1.0_unigene8213
ACCCTGCGGATGGAATGGAGTAACCTGTGAACAAATTCCAGGCAATAACGATTCCAGTGTCATCAGTCTAGTTCTATCCGGACGCCAGCTTGTGGGCAGCATTCCATCAGAGCTAGGATGCCTTCAATACCTTCGTCACCTTGACCTTTCCAGCAATGATATCAATGGAACGATTCCCTATGAGCTCTTCCAGGCAACAGACATGCAAAATCTTAGCTTGGCCAACAATTTAATCTCTGGCACCCTGCCTTCGAGCATACAGCAGTTGAAAGCTTTACAGTACCTTGACCTGTCAAGCAATGGCCTCACAGGAATCATCCCAGAGAACATAACAACATTGACGGAACTAAGAGCTGTCATTTTGGGAAGTAACTATTTTTCAGGACCTATTCCCAAAGGATTTGGATCACACGGAAAAGCTCTTGAAGTGTTGGATTTGTCTTCAAATATGCTTAATGAATCTATCCCTGCTGATCTTGGCAAGTTATCAAGTCTATACTGCTTTCTCAACCTGTCTA

Ace file of the UniGene biog3_v1.0_unigene8213

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1550	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	receptor kinase-like protein [Arabidopsis thaliana] emb\|CAB80391.1\| receptor kinase-like protein [Arabidopsis thaliana]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at4g37250-like	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	61%
Blast2go	metabolic process	GO:0008152	Biological Process	61%
Blast2go	kinase activity	GO:0016301	Molecular Function	61%
Blast2go	cell part	GO:0044464	Cellular Component	61%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	TRAM domain	IPR002792	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein of unknown function DUF1242	IPR009653	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPN7

Fln msg: Distance to subject end: 492 aas, your sequence is shorter than subject: 172 - 737

Fln protein: PCGWNGVTCEQIPGNNDSSVISLVLSGRQLVGSIPSELGCLQYLRHLDLSSNDINGTIPYELFQATDMQNLSLANNLISGTLPSSIQQLKALQYLDLSSNGLTGIIPENITTLTELRAVILGSNYFSGPIPKGFGSHGKALEVLDLSSNMLNESIPADLGKLSSLYCFLNLS

Protein Length: 173

Fln nts: ACCCTGCGGATGGAATGGAGTAACCTGTGAACAAATTCCAGGCAATAACGATTCCAGTGTCATCAGTCTAGTTCTATCCGGACGCCAGCTTGTGGGCAGCATTCCATCAGAGCTAGGATGCCTTCAATACCTTCGTCACCTTGACCTTTCCAGCAATGATATCAATGGAACGATTCCCTATGAGCTCTTCCAGGCAACAGACATGCAAAATCTTAGCTTGGCCAACAATTTAATCTCTGGCACCCTGCCTTCGAGCATACAGCAGTTGAAAGCTTTACAGTACCTTGACCTGTCAAGCAATGGCCTCACAGGAATCATCCCAGAGAACATAACAACATTGACGGAACTAAGAGCTGTCATTTTGGGAAGTAACTATTTTTCAGGACCTATTCCCAAAGGATTTGGATCACACGGAAAAGCTCTTGAAGTGTTGGATTTGTCTTCAAATATGCTTAATGAATCTATCCCTGCTGATCTTGGCAAGTTATCAAGTCTATACTGCTTTCTCAACCTGTCTA

Fln Alignment:

Contig8213___PCGWNGVTCEQI----PGNNDSSVISLVLSGRQLVGSIPSELGCLQYLRHLDLSSNDINGTIPYELFQATDMQNLSLANNLISGTLPSSIQQLKALQYLDLSSNGLTGIIPENITTLTELRAVILGSNYFSGPIPKGFGSHGKALEVLDLSSNMLNESIPADLGKLSSLYCFLNLS
C0PPN7_________________PCDWSGVECGEVIATDRGTVEERVVSLELDSRQLGGSLSPAIGWLSGLKRLSLAHNMLVGNIPKDITDCLKLEYLDLRGNRLSGPIPSDIARISALASISLNGNMLIGSIPKSLGSLQSLVVLHLHGNFLQGEIPPALADDGSKLQFLDVSSNFLVGRIPPSFAKVKTLR-FLNVS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
39	33	66			0.997452
41			66	33	0.997452
43		66		33	0.997452
179	16			83	0.994512
183	83			16	0.994512
274	16			83	0.994512
304	20	80			0.995493
308		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain