SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8178

Length: 871 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8178 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17088	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	putative splicing factor [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	rna-binding protein 39-like	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Splicing factor, CC1-like	IPR006509	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
326		66	33		0.997452
327		66		33	0.997452
453	16		83		0.994512
455	16	83			0.994512
457		83		16	0.994512
526	16		83		0.994512
527	16	83			0.994512
531			83	16	0.994512
610	10	90			0.90298
613		90		10	0.90298
641	10		90		0.90298
643		90		10	0.90298
664	87	12			0.992554
667		87		12	0.992554
678	14			85	0.993533
718	20	80			0.995493
719	20	20			0.99255
721		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain