SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8172

Length: 534 nt

UniGene Fasta

>biog3_v1.0_unigene8172
AATGTACCCTTTGTTTATCAAGTAGGCCCTGGCTGGGCTATATTCATCAATGTCACTTTCTTTTAACTCCACTTTCTTACGAGACTCTTGAATATGCAGCATCATTTTCTTCTGATCAGTGTGCTGAAGGTGTGGTTGCAGTTGCTGGGGATGCACTTAGGGTTTTTACGATTGAAAGGTTGGGAGAAACATTCAATCAGACTGTTATGCCTCTTAGATATACCCCAAGAAAGTTCATTTTGCATCCAAAGCAGAAATCATTGATTATTATTGAAAGCGATCAGGGTGCATTCACTGCAGAAGAACGTGAAGCTGCAAAGAAAGAATGCTTAGAAGCTGCTGGTTTAGGGGAGAGTGGGAACATGGAAACAGAGCAGCAGAATGGTGATGATGAAGAGAAGGAGGATCCACTTCCTGATGAGCAGTATGGTTATCCAAAAGCAGAGTCAAAGAAGTGGGCATCTTGTGTTAGAGTTCTAGATCCCAAAACTGGTGAAACTACATGCCTCTTGGCACTGCAGGATAATGAAGCTG

Ace file of the UniGene biog3_v1.0_unigene8172

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene560	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	splicing factor 3B subunit 3 [Arabidopsis thaliana] ref\|NP_567016.1\| putative splicing factor [Arabidopsis thaliana] emb\|CAB75754.1\| spliceosomal-like protein [Arabidopsis thaliana] emb\|CAB75756.1\| spliceosomal-like protein [Arabidopsis thaliana] gb\|AEE79	-	-	77%
FL-Next	tr=Spliceosomal protein sap, putative; Ricinus communis (Castor bean).	-	-	81%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T8E6

Fln msg: Distance to subject end: 330 aas, your sequence is shorter than subject: 177 - 1214

Fln protein: CTLCLSSRPWLGYIHQCHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNQTVMPLRYTPRKFILHPKQKSLIIIESDQGAFTAEEREAAKKECLEAAGLGESGNMETEQQNGDDEEKEDPLPDEQYGYPKAESKKWASCVRVLDPKTGETTCLLALQDNEA

Protein Length: 178

Fln nts: AATGTACCCTTTGTTTATCAAGTAGGCCCTGGCTGGGCTATATTCATCAATGTCACTTTCTTTTAACTCCACTTTCTTACGAGACTCTTGAATATGCAGCATCATTTTCTTCTGATCAGTGTGCTGAAGGTGTGGTTGCAGTTGCTGGGGATGCACTTAGGGTTTTTACGATTGAAAGGTTGGGAGAAACATTCAATCAGACTGTTATGCCTCTTAGATATACCCCAAGAAAGTTCATTTTGCATCCAAAGCAGAAATCATTGATTATTATTGAAAGCGATCAGGGTGCATTCACTGCAGAAGAACGTGAAGCTGCAAAGAAAGAATGCTTAGAAGCTGCTGGTTTAGGGGAGAGTGGGAACATGGAAACAGAGCAGCAGAATGGTGATGATGAAGAGAAGGAGGATCCACTTCCTGATGAGCAGTATGGTTATCCAAAAGCAGAGTCAAAGAAGTGGGCATCTTGTGTTAGAGTTCTAGATCCCAAAACTGGTGAAACTACATGCCTCTTGGCACTGCAGGATAATGAAGCTG

Fln Alignment:

Contig8172___LCLSSRPWLGYIHQCHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNQTVMPLRYTPRKFILHPKQKSLIIIESDQGAFTAEEREAAKKECLEAAGLGESGNMETEQ-QNGXXXXXXXXXXXXQYGYPKAESKKWASCVRVLDPKTGETTCLLALQDNEA
B9T8E6_________________LCLSSRPWLGYIHQGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRIFTIERLGETFNETAIPLRYTPRKFVLQPKKKLLVIVESDQGAYTAEEREAAKKECFEAAGMGENGSANAEQMENGDDEDKDDPLSDEQYGYPKAEAEKWVSCIRVLDPRTAATTCLLELQDNEA

SNPs (tot: 3)

Position	A %	C %	T %	Probability
167	33		66	0.997452
169		66	33	0.997452
296	25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain