SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8140

Length: 1027 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8140 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6917	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]	-	-	74%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	ubiquitin carboxyl-terminal hydrolase 12-like	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	90%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q84WU2

Fln msg: your sequence is shorter than subject: 220 - 1115

Fln protein: QGLKSLKVAFHHSTKDEVSVHSIRLPKQSTVGDVINELRTKVELSHATAEIRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEVPEEEKNLGPHDRLIHVYHFTRDASQNHMVQNFGEPFFLVIREGETLSDVKERIQKKLQVPDEEFSKWKFAFLSLGRPEYLQDTDVISSRFQRRDVYGAWEQYLGLEHSDSAPKRSHQTNQNRHTFEKPVKIYN*

Protein Length: 221

Fln nts: CAAGGCTTAAAATCATTAAAAGTAGCTTTTCATCATTCAACAAAAGATGAAGTATCTGTTCACAGTATACGATTGCCCAAACAAAGTACTGTTGGGGATGTTATTAATGAGCTGAGGACAAAGGTTGAGCTGTCACACGCTACCGCTGAAATTCGATTGCTCGAGGTGTTTTATCACAAAATTTACAAGATTTTTCCACTAAATGAAAAGATTGAGAACATAAATGATCAGTATTGGACATTACGAGCAGAGGAGGTCCCAGAAGAGGAGAAGAATCTAGGCCCTCATGATCGTTTAATCCATGTTTATCATTTTACAAGAGATGCGTCGCAGAATCACATGGTCCAAAATTTTGGAGAGCCTTTCTTTCTGGTCATTAGGGAAGGTGAAACTTTATCAGATGTTAAGGAAAGAATCCAGAAGAAGTTGCAGGTTCCTGATGAAGAATTTTCCAAATGGAAGTTTGCATTCCTCTCCTTGGGTCGCCCAGAGTACCTTCAGGATACGGATGTTATTTCGAGTCGTTTTCAGCGGAGAGATGTTTATGGAGCTTGGGAGCAATATCTTGGATTGGAGCATTCAGATAGTGCACCCAAACGATCTCATCAAACCAACCAGAATCGTCACACTTTTGAAAAGCCTGTAAAGATATACAACTGA___AAGAAAATCTAAAATGGTGATTTCTTTATACTTGCAATGGAAGAGAGAGAATTGTACCATTTATAGTTGCCTCCATTTTGTTAGAATTTAGAAACTTAGATGGTACTTGGGAAGGTGAATGCAGTCGTTTATGATATAGTGAAGAGAAGTCAGCATCTCTATATTAATTGATGCCATATCTGTGGCTTGTCAAAGTTATAGAAAACAATGTCTTGTTTGGTTCCCCAATTAGAGAACTCAGATTCAGATCAGTATTAGACCAGCAGATTTTTATAGACGACTGTATTTTCATGTCAGAGCTGCTGACTGGTGGTGTCCAATTATTTCTTTGATTATATTTTAATGTACATTAAAACTATGCTACATT

Fln Alignment:

Contig8140___QGLKSLKVAFHHSTKDEVSVHSIRLPKQSTVGDVINELRTKVELSHATAEIRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEVPEEEKNLGPHDRLIHVYHFTRDASQNHMVQNFGEPFFLVIREGETLSDVKERIQKKLQVPDEEFSKWKFAFLSLGRPEYLQDTDVISSRFQRRDVYGAWEQYLGLEHSDSAPKRSHQTNQNRHTFEKPVKIYN
Q84WU2_________________QGLKTLKVAFHSATKDEVIIHNIRLPKQSTVGDVINELKTKVELSHQDAELRLLEVFFHKIYKIFPSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAGQNQQVQNFGEPFFLVIHEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYLLDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
145	33		66		0.997452
146		33	66		0.997452
148	66			33	0.997452
149		66		33	0.997452
159	75			25	0.996473
569	20	80			0.995493
571			20	80	0.995493
572		80		20	0.995493
751		80		20	0.995493
910	25			75	0.996473
977	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain