SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7894

Length: 1085 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7894 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23163	56/56

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=3 Tax=Picea sitchensis RepID=A9NK08_PICSI	-	-	89%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	multicatalytic endopeptidase complex	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate--cysteine ligase.	EC:6.3.2.2	-	0.0	96%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		0.0	96%
Blast2go	Metabolic pathways	01100		0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	96%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	96%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	96%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	96%
Blast2go	defense response to fungus	GO:0050832	Biological Process	96%
Blast2go	indole phytoalexin biosynthetic process	GO:0009700	Biological Process	96%
Blast2go	glucosinolate biosynthetic process	GO:0019761	Biological Process	96%
Blast2go	defense response to insect	GO:0002213	Biological Process	96%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	96%
Blast2go	response to heat	GO:0009408	Biological Process	96%
Blast2go	response to ozone	GO:0010193	Biological Process	96%
Blast2go	glutathione biosynthetic process	GO:0006750	Biological Process	96%
Blast2go	protein binding	GO:0005515	Molecular Function	96%
Blast2go	peptidase activity	GO:0008233	Molecular Function	96%
Blast2go	glutamate-cysteine ligase activity	GO:0004357	Molecular Function	96%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	96%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	96%
Blast2go	phragmoplast	GO:0009524	Cellular Component	96%
Blast2go	spindle	GO:0005819	Cellular Component	96%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	96%
Blast2go	proteasome complex	GO:0000502	Cellular Component	96%
Blast2go	nucleus	GO:0005634	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX29

Fln msg:

Fln protein: MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNIVLAVERKSTAKLEDSRTVRKIVNLDNHIALACAGLKADARVLINKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGAPSLYQTDPSGTFSAWKANATGRNSNSIRDFLEKNYKETAGHETIKLAARALLEVVESKGNNIEIAVMTRDKGLQQLEESEVEAIVAEVEAEKAAAEAAKKAPTPRD*

Protein Length: 251

Fln nts: CTACTCCTCTCCTTTTTCTCTGTCTGAAGAATTTGGATGAGCAACTCTCTTGCTGTAGTAGCCCAGTGAGTGTTGCAGGAAGGCATATCCATATTCAGGGTGCTCTGTTCTCGGGAAAACTATCTTTAGCTGAGGAGTACATTTGCACATAATTTTAGGGTTCTGAAGGTGGTTTTGCGATCGTAAGA_-_ATGGCGAGATATGACAGAGCAATTACGGTGTTTTCACCAGACGGTCATCTGTTTCAGGTGGAGTATGCCTTAGAGGCCGTACGGAAGGGTAACGCAGCTGTTGGAGTTCGAGGGACTGATAACATCGTGTTGGCTGTCGAGAGAAAGTCCACGGCTAAGCTTGAAGATTCCAGAACTGTACGGAAAATTGTAAATCTAGATAACCACATTGCATTGGCTTGTGCGGGGCTCAAAGCAGATGCTCGTGTGCTGATTAACAAGGCTAGAATTGAGTGTCAAAGTCATAGACTGACTGTTGAGGATCCTGTTACTGTGGAATATATCACTCGATACATTGCAGGTCTCCAGCAGAAGTACACCCAAAGTGGTGGTGTGAGGCCTTTTGGTCTGTCCACACTCATTGTAGGCTTTGATCCATATACAGGTGCTCCTTCTCTTTACCAGACAGATCCATCTGGTACATTTTCAGCATGGAAGGCAAATGCGACAGGAAGAAATTCAAATTCTATCAGAGATTTTTTAGAAAAGAATTACAAAGAGACAGCAGGGCATGAAACTATAAAGCTTGCAGCCAGAGCATTACTGGAAGTTGTTGAAAGTAAAGGAAACAACATAGAGATTGCTGTGATGACACGCGATAAGGGGTTGCAGCAGCTTGAGGAATCTGAGGTTGAGGCTATTGTAGCTGAGGTTGAAGCAGAAAAAGCAGCGGCTGAGGCTGCGAAAAAGGCTCCCACTCCTAGAGATTAA___ATCTGAATGTTTCCTTTGCCATTAATTACAGGTCTACTGATATTTTTTGCCTGTTTGAGTTTCATTCAGTTTTATAACTGTCATTTCTCATTATGCATTCTGCTTTTATGATTTTGGCTTTTTCAATCTTCGAAAGGCAGTTACATT

Fln Alignment:

Contig7894___MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNIVLAVERKSTAKLEDSRTVRKIVNLDNHIALACAGLKADARVLINKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGAPSLYQTDPSGTFSAWKANATGRNSNSIRDFLEKNYKETAGHETIKLAARALLEVVESKGNNIEIAVMTRDKGLQQLXXXXXXXXXXXXXXXXXXXXXXXXAPTPRD
A9NX29_________________MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNIVLAVERKSTAKLEDSRTVRKIVNLDNHIALACAGLKADARVLINKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGAPSLYQTDPSGTFSAWKANATGRNSNSIRDFLEKNYKETAGHETIKLAARALLEVVESKGNNIEIAVMTRDKGLQQLEESEVEAIVAEVEAEKAAAEAAKKAPTPRD

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
62	66			33	0.997452
179	25	75			0.996473
188	20	80			0.995493
189	20	80			0.995493
190			80	20	0.995493
191		80	20		0.995493
224		83		16	0.994512
258		83		16	0.994512
386		83		16	0.994512
405	14			85	0.993533
406	18	81			0.999994
698		11		88	0.923564
734	14	85			0.993533
735	14			85	0.993533
737		85	14		0.993533
738	85			14	0.993533
766			85	14	0.993533
767		85		14	0.993533
916		80		20	0.999996
917		80		20	0.999996
953		87		12	0.992554
968	12		87		0.992554
969		12		87	0.992554
970	12			87	0.992554
1001		14		85	0.993533
1004			85	14	0.993533
1048	25			75	0.996473
1052		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain