SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7823

Length: 432 nt

UniGene Fasta

>biog3_v1.0_unigene7823
AATTTGGGTCCAGTGGATTGGAGTGTGAATGATGCTATCTCATTTTTGCAAAACCGTTTAGAATTCCTGTTTCTAGCCGTCCAACAGCAGTCAATCTTTCAGATGCTGCGACAAAGTTGAATGAAGTGGTGCTAAAGGCAGCCAATGATATGTCCAAACCTGAAGCTATTTTTCAGGCATATATTGAAGCTGCTGAAGTTATGCTGATGGCTGATATTAATGACAATAAAGCAATTGGTTCAAATGGGGCGAAGTTTATTCTAAGTCAACACCAGAAGCGTCACAATCTTCATGTTTTGACTCATTGCAACACGGGAAGCCTTGCAACAGCTGGATATGGTACTGCTCTTGGTGTCATTCGTGCCTTACACTCAGAGGGATTGCTGGAAACTGCTTTTTGCACAGAAACTCGACCATATAACCAGGGACATT

Ace file of the UniGene biog3_v1.0_unigene7823

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2503	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Methylthioribose-1-phosphate isomerase n=1 Tax=Nicotiana tabacum RepID=MTNA_TOBAC	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	methylthioribose-1-phosphate isomerase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	S-methyl-5-thioribose-1-phosphate isomerase.	EC:5.3.1.23	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	82%
Blast2go	cellular response to iron ion	GO:0071281	Biological Process	82%
Blast2go	cellular response to ethylene stimulus	GO:0071369	Biological Process	82%
Blast2go	L-methionine biosynthetic process from S-adenosylmethionine	GO:0019284	Biological Process	82%
Blast2go	cellular response to nitric oxide	GO:0071732	Biological Process	82%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	82%
Blast2go	S-methyl-5-thioribose-1-phosphate isomerase activity	GO:0046523	Molecular Function	82%
Blast2go	GTP binding	GO:0005525	Molecular Function	82%
Blast2go	eukaryotic translation initiation factor 2B complex	GO:0005851	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%
Blast2go	endomembrane system	GO:0012505	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Initiation factor 2B-related	IPR000649	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase	IPR005251	-	-
Sma3	Methylthioribose kinase	IPR009212	-	-
Sma3	Initiation factor 2B alpha/beta/delta	IPR011559	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABV6

Fln msg: Overlapping hits, possible frame ERROR between 69 and 69, Distance to subject end: 165 aas, your sequence is shorter than subject: 144 - 384

Fln protein: NLGPVDWSVNDAISFLQNRLEFxxSSRPTAVNLSDAATKLNEVVLKAANDMSKPEAIFQAYIEAAEVMLMADINDNKAIGSNGAKFILSQHQKRHNLHVLTHCNTGSLATAGYGTALGVIRALHSEGLLETAFCTETRPYNQGH

Protein Length: 145

Fln nts: AATTTGGGTCCAGTGGATTGGAGTGTGAATGATGCTATCTCATTTTTGCAAAACCGTTTAGAATTCxxxxxxTCTAGCCGTCCAACAGCAGTCAATCTTTCAGATGCTGCGACAAAGTTGAATGAAGTGGTGCTAAAGGCAGCCAATGATATGTCCAAACCTGAAGCTATTTTTCAGGCATATATTGAAGCTGCTGAAGTTATGCTGATGGCTGATATTAATGACAATAAAGCAATTGGTTCAAATGGGGCGAAGTTTATTCTAAGTCAACACCAGAAGCGTCACAATCTTCATGTTTTGACTCATTGCAACACGGGAAGCCTTGCAACAGCTGGATATGGTACTGCTCTTGGTGTCATTCGTGCCTTACACTCAGAGGGATTGCTGGAAACTGCTTTTTGCACAGAAACTCGACCATATAACCAGGGACATT

Fln Alignment:

Contig7823___NLGPVDWSVNDAISFLQNRLEFLVSSRPTAVNLSDAATKLNEVVLKAANDMSKPEAIFQAYIEAAEVMLMADINDNKAIGSNGAKFILSQHQKRHNLHVLTHCNTGSLATAGYGTALGVIRALHSEGLLETAFCTETRPYNQG
D5ABV6_________________NLGSVDWSVNDAISFLQKRLEFLVSSRPTAVNLSDAATKLNDVVLKATNDMSKPEAIFQAYVEAAEGMLIDDIDTNKAIGSNGAKFILSQTQKCHNLHVLTHCNTGSLATAGYGTALGVIRALHSEGLLETAFCTETRPYNQG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
236	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain