SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7797

Length: 997 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7797 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8624	22/23

Source	Descriptions	Term	Type	Identity
AutoFact	Cation-transporting atpase 13a1, putative n=1 Tax=Ricinus communis RepID=B9RHM6_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cation-transporting atpase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	80%
Blast2go	stem cell fate determination	GO:0048867	Biological Process	80%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	80%
Blast2go	pollen germination	GO:0009846	Biological Process	80%
Blast2go	pollen maturation	GO:0010152	Biological Process	80%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	80%
Blast2go	cation transport	GO:0006812	Biological Process	80%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	80%
Blast2go	meristem maintenance	GO:0010073	Biological Process	80%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	80%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Cof protein	IPR000150	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, unknown pump specificity (type V)	IPR006544	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY8

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 332 - 629

Fln protein: DSAGHSGNAIATDEGQTGNASINQPVRSSGLPGGSQASHGASSNRHLTPAERQRLKLKKIMDEMEGEGDGRTPPIVRLGDASMASPFTAKHASVRPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDMQATISGIFTAAFFLFISHARPLNTLSAQRPHPNIFCAYVLFSVLGQFAIHITFLISSVKEAEKYMPEECIEPDSEFHPNLVNTVSYMANMMIQVATFAVNYMGHPFNQSIKENKPFCYALTAAVLFFTAITSDMFRSLNDWLRLVPLPQPFGSKLLLWAMLMMISCFIWEHSLRWTFPGRMPSWKRRQRH

Protein Length: 333

Fln nts: GATTCAGCTGGTCATTCTGGAAATGCTATTGCAACTGATGAAGGGCAAACAGGCAATGCATCCATTAATCAGCCAGTGAGGAGTTCAGGATTGCCTGGTGGATCTCAAGCATCTCATGGTGCAAGTAGCAACCGTCATCTTACTCCTGCAGAGAGACAAAGGCTGAAATTGAAAAAGATTATGGATGAGATGGAAGGGGAGGGAGATGGCAGAACTCCACCCATTGTGAGGCTTGGAGATGCATCAATGGCCTCTCCTTTCACTGCTAAGCATGCATCAGTAAGGCCGACAACAGATATTATTCGGCAGGGACGTAGCACACTTGTTACAACTTTACAGATGTTCAAGATACTGGGATTAAATTGCCTAGCAACTGCTTATGTATTAAGTGTTATGTACTTGGATGGAGTAAAGCTAGGTGATATGCAAGCCACCATCAGTGGCATTTTTACTGCAGCATTTTTCTTGTTCATTTCTCATGCTCGTCCTCTGAACACACTTTCAGCCCAGCGTCCACATCCCAACATTTTTTGTGCTTATGTGTTATTTTCAGTTCTGGGGCAGTTTGCAATTCACATAACATTTCTTATCTCTTCCGTTAAAGAAGCAGAAAAGTATATGCCAGAAGAGTGTATTGAACCTGATTCAGAGTTTCATCCAAACTTAGTTAATACAGTCTCGTACATGGCCAATATGATGATACAAGTAGCCACGTTTGCTGTAAATTACATGGGCCATCCTTTCAACCAAAGTATCAAGGAGAATAAACCTTTTTGCTATGCATTGACAGCTGCTGTTCTGTTTTTTACTGCTATCACCTCAGACATGTTCCGAAGCTTGAATGATTGGCTAAGGTTAGTTCCTCTCCCACAGCCCTTTGGAAGTAAGCTGCTTCTTTGGGCCATGCTTATGATGATTAGTTGCTTTATTTGGGAGCATAGTCTGCGATGGACATTCCCGGGTAGGATGCCTTCATGGAAGCGGAGGCAACGACATT

Fln Alignment:

Contig7797___DSAGHSGNAIATDEGQTGNASINQPVRSSGLPGGSQASHGASSNRHLTPAERQRLKLKKIMDEMEGEGDGRTPPIVRLGDASMASPFTAKHASVRPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDMQATISGIFTAAFFLFISHARPLNTLSAQRPHPNIFCAYVLFSVLGQFAIHITFLISSVKEAEKYMPEECIEPDSEFHPNLVNTVSYMANMMIQVATFAVNYMGHPFNQSIKENKPFCYALTAAVLFFTAITSDMFRSLNDWLRLVPLPQPFGSKLLLWAMLMMISCFIWEHSLRWTFPGRMPSWKRRQR
B8LRY8_________________DSAGHSGNSIAIDEGQAGNASSNQPVRSLALSAGSQASHGSTSNRQLTPAERQRLKLKKIMDEMGEEGDGRTAPIVRLGDASMASPFTAKHASVRPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDMQATISGIFTAAFFLFISHARPLNTLSTQRPHPNIFCAYVLFSVLGQFAIHITFLISSVKEAEKYMPEECIEPDSEFHPNLVNTVSYMANMMIQVATFAVNYMGHPFNQSIKENKPFCYALTAAVLFFTAITSDMFRSLNDWLKLVPLPQPFGSKLLLWAMLMMTSCFIWEHLLRWVFPGRMPSWKRKQR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
239	25	75			0.996473
279	33		66		0.997452
280		66	33		0.997452
282	66	33			0.997452
285	33		66		0.997452
287			66	33	0.997452
458	71			28	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain