SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7775

Length: 749 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7775 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19465	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme 1, E2 n=1 Tax=Selaginella moellendorffii RepID=D8SK34_SELML	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ubiquitin carrier protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	78%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	78%
Blast2go	histone H2B ubiquitination	GO:0033523	Biological Process	78%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	78%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	78%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	78%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
214	25		75		0.996473
216	25	75			0.996473
218	80			20	0.995493
262	25			75	0.996473
265			75	25	0.996473
266			75	25	0.996473
285	25		75		0.996473
286	25		75		0.996473
287			75	25	0.996473
288		75	25		0.996473
289	75			25	0.996473
301	20			80	0.995493
302	20	80			0.995493
304		80	20		0.995493
305		80		20	0.995493
466	10		90		0.90298
467	10			90	0.90298
469		90	10		0.90298
470		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain