SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7746

Length: 516 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7746
AATGTATAGGAGAAGACCAACCTCATATTTTGATTCCAAAGGCATCCTTATGGTCAACTTTTATAGCATCCACCTTCTTTACCATTACGGCGACAAGTTTGTCAACTGGCCCTATGAGGCGACTGCAGGAGCGCATCCTGGGGCCAAGGTGGACAGGTGGCTTGGCGTCTAGCAGTGAAATTTGGTTGTTAGGGGTGTGCTATAAGCTTTTGGCAGATGAATCTTCCAGTGATTCAACTGCTAGTGAGGGCTATGCAGAATTTCTGCATGATTTCTCTTCAAGAATTTGGCTGACCTATCGGAAAGGATTTGAACCAATTGGTGAATCAAAATATGTCACCGATGTTGGGTGGGGTTGCATGCTTCGTAGTGGGCAGATGCTTGTAGCTCAGGCTTTACTCTTTCATCATTTAGGGAGGTCTTGGCGAAGGCCAACAGAACAGCCATTTAATCAGGAGTATATCGAGATCTTGCGGTGTTTTTCGAGATTCTCCTTCAGAGGCTTCTCCCTACATT

Ace file of the UniGene biog3_v1.0_unigene7746 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene341	6/7

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cysteine protease ATG4B; AltName: Full=Autophagy-related protein 4 homolog B; Short=Protein autophagy 4; AltName: Full=OsAtg4	-	-	56%
FL-Next	Isoform 2 of Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B	-	-	59%
Blast2go	cysteine protease atg4-like	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine-type carboxypeptidases.	EC:3.4.18.-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	autophagy	GO:0006914	Biological Process	74%
Blast2go	protein transport	GO:0015031	Biological Process	74%
Blast2go	cysteine-type carboxypeptidase activity	GO:0016807	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	APG8-specific protease activity	GO:0019786	Molecular Function	74%
Blast2go	autophagic vacuole	GO:0005776	Cellular Component	74%
Blast2go	vacuolar lumen	GO:0005775	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase C54	IPR005078	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9M1Y0-2

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 134 - 267

Fln protein: MRRLQERILGPRWTGGLASSSEIWLLGVCYKLLADESSSDSTASEGYAEFLHDFSSRIWLTYRKGFEPIGESKYVTDVGWGCMLRSGQMLVAQALLFHHLGRSWRRPTEQPFNQEYIEILRCFSRFSFRGFSLH

Protein Length: 135

Fln nts: AATGTATAGGAGAAGACCAACCTCATATTTTGATTCCAAAGGCATCCTTATGGTCAACTTTTATAGCATCCACCTTCTTTACCATTACGGCGACAAGTTTGTCAACTGGCCCT_-_ATGAGGCGACTGCAGGAGCGCATCCTGGGGCCAAGGTGGACAGGTGGCTTGGCGTCTAGCAGTGAAATTTGGTTGTTAGGGGTGTGCTATAAGCTTTTGGCAGATGAATCTTCCAGTGATTCAACTGCTAGTGAGGGCTATGCAGAATTTCTGCATGATTTCTCTTCAAGAATTTGGCTGACCTATCGGAAAGGATTTGAACCAATTGGTGAATCAAAATATGTCACCGATGTTGGGTGGGGTTGCATGCTTCGTAGTGGGCAGATGCTTGTAGCTCAGGCTTTACTCTTTCATCATTTAGGGAGGTCTTGGCGAAGGCCAACAGAACAGCCATTTAATCAGGAGTATATCGAGATCTTGCGGTGTTTTTCGAGATTCTCCTTCAGAGGCTTCTCCCTACATT

Fln Alignment:

Contig7746___GPMRRLQERILGPRWTGGLASSSEIWLLGVCYKXXXXXXXXXXXXXEGYAEFLHDFSSRIWLTYRKGFEPIGESKYVTDVGWGCMLRSGQMLVAQALLFHHLGRSWRRPTEQPFNQEYIEIL
Q9M1Y0-2_______________GAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFSSLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLGRSWRKKDSEPADEKYLEIL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
245	75	25			0.996473
247	75			25	0.996473
302	33			66	0.997452
409	25		75		0.996473
414			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain