SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7708

Length: 274 nt

UniGene Fasta

>biog3_v1.0_unigene7708
GTTCCTCTTGATTCCAATGGCACACATGTTGTCTTGCTCATCATGGTGTCCCTCCAGCTAATATTTGTGTTGGAACTCCTCGGTGGATGGCCCCGGAGATGATGCAAGCGATGCATAGGCCACATAGATATGGATTGGAAGTTGATATTTGGTCGTTTGGGTGCCTTATTTTAGAGTTGTTGACTCTACAAATACCCTTTATGGGATTATCGGATGTAGAGGTTCATAACTCATTACAGATGGGACTAAGGCCCCAACTTAATCCAGAACTGGA

Ace file of the UniGene biog3_v1.0_unigene7708

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27244	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb\|AAC16742.1\| Contains similarity to adenylate cyclase gb\|AF012921 from Magnaporthe grisae. EST gb\|Z24512 comes from this gene [Arabidopsis thaliana] gb\|AAM20583.1\| unknown protein [A	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	at1g04210	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A932

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 57 aas, your sequence is shorter than subject: 90 - 271

Fln protein: SS*FQWHTCCLAHHGVPPANICVGTPRWMAPEMMQAMHRPHRYGLEVDIWSFGCLILELLTLQIPFMGLSDVEVHNSLQMGLRPQLNPEL

Protein Length: 91

Fln nts: GTTCCTCTTGATTCCAATGGCACACATGTTGTCTTGCTCATCATGGTGTCCCTCCAGCTAATATTTGTGTTGGAACTCCTCGGTGGATGGCCCCGGAGATGATGCAAGCGATGCATAGGCCACATAGATATGGATTGGAAGTTGATATTTGGTCGTTTGGGTGCCTTATTTTAGAGTTGTTGACTCTACAAATACCCTTTATGGGATTATCGGATGTAGAGGTTCATAACTCATTACAGATGGGACTAAGGCCCCAACTTAATCCAGAACTGGA

Fln Alignment:

Contig7708___HTCCLAHHGVPPANICVGTPRWMAPEMMQAMHRPHRYGLEVDIWSFGCLILELLTLQIPFMGLSDVEVHNSLQMGLRPQLNPEL
D5A932_________________HTCCLAHHGVPPANICVGTPRWMAPEMMRAMHRPHRYGLEVDIWSFGCLILELLTLQVPFMGLSDVEVHNSLQMGLRPQLIPEL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
217	25	75			0.996473
218		25	75		0.996473
219	25		75		0.996473
220	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain