SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7700

Length: 442 nt

UniGene Fasta

>biog3_v1.0_unigene7700
AATGTCCCTCTTTAATAGCAAACCCTCCTTCACTTCTTCTGGTCTCTCTCTTGCGCCGCCGAGACGTGTTGAAGACCGTCACAACAGCCAAACGGCGGAAACAGATCTGGAGAAAATGAGAGAAGAGGAATTTGAGAGTAAATCCGGAAGCGAAAACATCGAGGGAGCATCTGGAGAAGAGCAGGATGTGGATCCACGGTCACGCAAAAAACGATACCATCGGCATACCCAGCATCAGATTCAAGAGTTGGAGATGTTCTTTCGAGAGTGTCCGCATCCTGATGATAAACAGAGGCAGGAACTCAGTCGGCGACTTTGCCTCGAGCCACGCCAAATTAAATTCTGGTTCCAGAACAAACGTACTCAAATGAAGGCTCACCATGAACGGCAGGATAATATTATGCTAAAATCAGAGAATGAGAAACTTCGTCTGGATAACATG

Ace file of the UniGene biog3_v1.0_unigene7700

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10887	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] ref\|NP_849596.1\| homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] ref\|NP_001184911.1\| homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] sp\|Q94C37.1\|HDG2_ARATH RecName: Full=H	-	-	75%
FL-Next	tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	72%
Blast2go	homeobox-leucine zipper protein hdg2	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	86%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	86%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	86%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	86%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FR59

Fln msg: Distance to subject end: 600 aas, atg_distance in limit (1-15): atg_distance = 16, your sequence is shorter than subject: 147 - 763

Fln protein: MSLFNSKPSFTSSGLSLAPPRRVEDRHNSQTAETDLEKMREEEFESKSGSENIEGASGEEQDVDPRSRKKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLCLEPRQIKFWFQNKRTQMKAHHERQDNIMLKSENEKLRLDNM

Protein Length: 148

Fln nts: A_-_ATGTCCCTCTTTAATAGCAAACCCTCCTTCACTTCTTCTGGTCTCTCTCTTGCGCCGCCGAGACGTGTTGAAGACCGTCACAACAGCCAAACGGCGGAAACAGATCTGGAGAAAATGAGAGAAGAGGAATTTGAGAGTAAATCCGGAAGCGAAAACATCGAGGGAGCATCTGGAGAAGAGCAGGATGTGGATCCACGGTCACGCAAAAAACGATACCATCGGCATACCCAGCATCAGATTCAAGAGTTGGAGATGTTCTTTCGAGAGTGTCCGCATCCTGATGATAAACAGAGGCAGGAACTCAGTCGGCGACTTTGCCTCGAGCCACGCCAAATTAAATTCTGGTTCCAGAACAAACGTACTCAAATGAAGGCTCACCATGAACGGCAGGATAATATTATGCTAAAATCAGAGAATGAGAAACTTCGTCTGGATAACATG

Fln Alignment:

Contig7700___TSSGLSLAPPRRVEDRHN-SQTAETDLEKMREEEFESKSGSENIEGASGEEQDVDPRSRKKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLCLEPRQIKFWFQNKRTQMKAHHERQDNIMLKSENEKLRLDNM
Q9FR59_________________TSSGLSLAQPNMAEGQFDMSQTADSEIAKIREEEFESKSGSDNVEGASGEDQDGERRPRKKRYHRHTQHQIQEMEMFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRSENM

SNPs (tot: 3)

Position	A %	G %	T %	Probability
138	20	80		0.995493
140	80	20		0.995493
141	80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain