SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7697

Length: 374 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7697
GCTTCATGTACCAGTTGTGCCAGGGGGTTGCTTACTGCCACAGTCGTGGTGTAATGCACAGGGACCTGAAGCCTCACAATCTCTTGGTGGATAAGCAAAGAGGTGTAGTAAAAATAGCAGATCTTGGCCTCGGAAGAGCATTTACAATTCCTATTAAGAAATATACACATGAGATTGTCACTCTCTGGTACAGGGCTCCTGAAGTTCTTCTGGGGGCTACTCACTACTCTACACCTGTAGACATCTGGTCTGTTGGTTGTATATTCGCTGAAATGGTCCGACTGCAAGCCCTGTTTATTGGAGATTCTGAAGTACAACAACTTTTCAAGATTTTCAGTTTTCTAGGAACTCCCAATGAAGAAGTCTGGCCAGGA

Ace file of the UniGene biog3_v1.0_unigene7697 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22574	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclin-dependent kinase B1-1 n=2 Tax=Oryza sativa RepID=CKB11_ORYSJ	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	b1-type cyclin dependent kinase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNM1

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 124 - 302

Fln protein: FMYQLCQGVAYCHSRGVMHRDLKPHNLLVDKQRGVVKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMVRLQALFIGDSEVQQLFKIFSFLGTPNEEVWPG

Protein Length: 125

Fln nts: GCTTCATGTACCAGTTGTGCCAGGGGGTTGCTTACTGCCACAGTCGTGGTGTAATGCACAGGGACCTGAAGCCTCACAATCTCTTGGTGGATAAGCAAAGAGGTGTAGTAAAAATAGCAGATCTTGGCCTCGGAAGAGCATTTACAATTCCTATTAAGAAATATACACATGAGATTGTCACTCTCTGGTACAGGGCTCCTGAAGTTCTTCTGGGGGCTACTCACTACTCTACACCTGTAGACATCTGGTCTGTTGGTTGTATATTCGCTGAAATGGTCCGACTGCAAGCCCTGTTTATTGGAGATTCTGAAGTACAACAACTTTTCAAGATTTTCAGTTTTCTAGGAACTCCCAATGAAGAAGTCTGGCCAGGA

Fln Alignment:

Contig7697___FMYQLCQGVAYCHSRGVMHRDLKPHNLLVDKQRGVVKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMVRLQALFIGDSEVQQLFKIFSFLGTPNEEVWPG
A9NNM1_________________FMYQLCQGVAYCHSRGVMHRDLKPHNILVDKQRGVIKIADLGLGRAFTIPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMSRMQALFIGDSEVQQLFKIFRFLGTPNEEIWPG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
54	33		66		0.997452
55	33			66	0.997452
212	25			75	0.996473
215	75		25		0.996473
265		25		75	0.996473
266	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain