SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7695

Length: 515 nt

UniGene Fasta

>biog3_v1.0_unigene7695
AATATCACCATTTGTGATAACAATAAGGAAATGGATGGCTATAAATTCTGGAAACAGGGTTTCTGGAAAGACCATCTACGTGGCAAGCACTACCATATTAGTGCCTTGTATGTTGTGGATTTGGACAAATTTCGTCAAACTGCTGCTGGAGATACATTGCGGGTATTTTATGAGACATTAAGTAAAGATCCAAACAGTCTCTCAAACCTTGATCAGGATCTTCCAAATTATGCTCAACATACAGTACCGATATTCTCACTGCCCCAGGAATGGTTGTGGTGCGAGTCTTGGTGTGGAAATGCTACAAAATCCAAAGCCAAGACCATTGATTTGTGCAATAATCCAATGACTAAGGAGCCTAAGCTACAGGGTGCCAGGCGCATTGTTGCTGAATGGCCAGCACTGGATGAAGAGGCAAGGAGATTTACTGCAAAATTCCTTGGTGAAGAGCTCCAACCCCAAACAGAGGAACCACGACAAGATAACCTACCAGAGCACGACAGCGATGGCGATTT

Ace file of the UniGene biog3_v1.0_unigene7695

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2121	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose:glycoprotein glucosyltransferase n=3 Tax=Arabidopsis RepID=F4I8G1_ARATH	-	-	78%
FL-Next	sp=UDP-glucose:glycoprotein glucosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	udp-glucose:glycoprotein glucosyltransferase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	83%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	83%
Blast2go	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	83%
Blast2go	protein glycosylation	GO:0006486	Biological Process	83%
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	83%
Blast2go	anthocyanin metabolic process	GO:0046283	Biological Process	83%
Blast2go	UDP-glucose:glycoprotein glucosyltransferase activity	GO:0003980	Molecular Function	83%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	UDP-glucose:Glycoprotein Glucosyltransferase	IPR009448	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q0WL80

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 171 - 1613

Fln protein: NITICDNNKEMDGYKFWKQGFWKDHLRGKHYHISALYVVDLDKFRQTAAGDTLRVFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSKAKTIDLCNNPMTKEPKLQGARRIVAEWPALDEEARRFTAKFLGEELQPQTEEPRQDNLPEHDSDGD

Protein Length: 172

Fln nts: AATATCACCATTTGTGATAACAATAAGGAAATGGATGGCTATAAATTCTGGAAACAGGGTTTCTGGAAAGACCATCTACGTGGCAAGCACTACCATATTAGTGCCTTGTATGTTGTGGATTTGGACAAATTTCGTCAAACTGCTGCTGGAGATACATTGCGGGTATTTTATGAGACATTAAGTAAAGATCCAAACAGTCTCTCAAACCTTGATCAGGATCTTCCAAATTATGCTCAACATACAGTACCGATATTCTCACTGCCCCAGGAATGGTTGTGGTGCGAGTCTTGGTGTGGAAATGCTACAAAATCCAAAGCCAAGACCATTGATTTGTGCAATAATCCAATGACTAAGGAGCCTAAGCTACAGGGTGCCAGGCGCATTGTTGCTGAATGGCCAGCACTGGATGAAGAGGCAAGGAGATTTACTGCAAAATTCCTTGGTGAAGAGCTCCAACCCCAAACAGAGGAACCACGACAAGATAACCTACCAGAGCACGACAGCGATGGCGATTT

Fln Alignment:

Contig7695___CDNNKEMDGYKFWKQGFWKDHLRGKHYHISALYVVDLDKFRQTAAGDTLRVFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSKAKTIDLCNNPMTKEPKLQGARRIVAEWPALDEEARRFTAKFLGEELQ-------PQTEEPRQDNLPEHDSDGD
Q0WL80_________________CDNNREMDGYKFWKQGFWKEHLRGRPYHISALYVVDLVKFRETAAGDNLRVFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKAKARTIDLCNNPMTKEPKLQGARRIVTEWPDLDLEARKFTAKILGEDVELNEPVAAPATDKP--NPLPSNDISED

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
178	20		80		0.995493
180		80	20		0.995493
182		20		80	0.995493
183	20			80	0.995493
187			80	20	0.995493
271	16	83			0.994512
274			83	16	0.994512
278	16		83		0.994512
279		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain