SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7685

Length: 382 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7685
ACCCTTTAATGGAAGAGTAGTAAATACGAAGAGTAAGCTTATGACTGGCATTTCAGACTGCATTGAGAACCCATTCATGTATTCTATTGAAGATCTCCAGGTAGCCACTCAGAATTTCAGCCCTTCGTGTAATATAGAGGGCTCTGTTTACAAAGGTACTCTAGATGGTAGGGATTATGCTATAAAGCTCATGAAAGGAGATATATCCCAAGAGTTGAAGATATTGCAGAAGGTCAACCACACTAATTTGGTTAAGCTAGAGGGATTTTGTATCAGTTCAGAGGGCCAGTCTTACTTGGTTTATGAGTATGTAGAAAATGTTCTTTGAATACCTGGCTTCATGATCCAGAATCTGTTGAGAACATGAGTCCCATTGGACATT

Ace file of the UniGene biog3_v1.0_unigene7685 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9024	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AAK43919.1\|AF370600_1 putative protein kinase [Arabidopsis thaliana] gb\|AAB80675.1\| putative protein kinase [Arabidopsis thaliana] gb\|ACI49790.1\| At2g33580 [Arabidopsis thaliana] gb\|AEC08855.1\| prote	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	72%
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	72%
Blast2go	gene expression	GO:0010467	Biological Process	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	72%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%
Blast2go	ribosome	GO:0005840	Cellular Component	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	CDP-alcohol phosphatidyltransferase	IPR000462	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Malonyl-CoA decarboxylase	IPR007956	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ73

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 210 aas, your sequence is shorter than subject: 109 - 536

Fln protein: PFNGRVVNTKSKLMTGISDCIENPFMYSIEDLQVATQNFSPSCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGFCISSEGQSYLVYEYVENVL*

Protein Length: 110

Fln nts: ACCCTTTAATGGAAGAGTAGTAAATACGAAGAGTAAGCTTATGACTGGCATTTCAGACTGCATTGAGAACCCATTCATGTATTCTATTGAAGATCTCCAGGTAGCCACTCAGAATTTCAGCCCTTCGTGTAATATAGAGGGCTCTGTTTACAAAGGTACTCTAGATGGTAGGGATTATGCTATAAAGCTCATGAAAGGAGATATATCCCAAGAGTTGAAGATATTGCAGAAGGTCAACCACACTAATTTGGTTAAGCTAGAGGGATTTTGTATCAGTTCAGAGGGCCAGTCTTACTTGGTTTATGAGTATGTAGAAAATGTTCTTTGAATACCTGGCTTCATGATCCAGAATCTGTTGAGAACATGAGTCCCATTGGACATT

Fln Alignment:

Contig7685___PFNGRVVNTKSKLMTGISDCIENPFMYSIEDLQVATQNFSPSCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGFCISSEGQSYLVYEYVEN
B8LQ73_________________PSDVGVGKTKSKLMTGISDCVENPFMYSIEDLDKATQNFSPLCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGVCISSEGQSYLVYEYIEN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
213		80	20		0.995493
285		25		75	0.996473
300	75			25	0.996473
370	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain