SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7667

Length: 2265 nt

UniGene Fasta

>biog3_v1.0_unigene7667
TACGCGGGAGTCAAGCGTAGCCAGCTTCCTACTTCCTGAGGTTTTACGAAATTCACACTAGGGTTTAAGATCCACTGAAGTAGATCAAAGCTCTGCCATGGCAACCAACGCGGCCTTCACCTTCGCGGGGGCACTGAACCTGTTTCAGCCCACAGCTCAACCAGATGGTCTGAGGAGCAGAAAGACGGCATTTTGTCAAAGGCCGATAGGTCCTCTTCAATTTAGAGCGAAACATCGAACGAGGAGCAACAGCAGGGTCTTGGTGAGGGCGTCGGCCAAGGATATATTGTTCGATCAGGCTTCGCGTGCAGCGGTGCAGAGGGGCATTGATAAATTGGCAGATGCCGTGGGCGTTACATTGGGGCCCAGAGGGCGGAATGTTGTATTGGACGAGCTTGGAATACCGAAGGTGGTGAATGATGGAGTTACCATCGCTCGTGCCATTGAGCTTGCTGACCCCATGGAAAATGCTGGGGCGGCCTTAATCCGAGAGGTTGCAAGTAAGACGAATGACTCAGCTGGTGATGGGACAACTACGGCATCAGTTTTGGCTCGGGAGATGATCAAACTAGGTCTTATGAATGTAACAGCGGGAGCAAATCCGGTTTCCTTGAAGAAAGGAATAGACAAGACTGTGCAGAGCCTAGTCGAAGAGCTACAGAAGAACGCCAGGGCTGTAAAAGGGCGAGATGATATCAAGGCGGTGGCCACGATTTCATCTGGGAATGATGATTTTGTGGGAACTATGATTGCTGATGCAATAGATAAGGTTGGGCCAGATGGAGTTCTGTCCATTGAGTCTTCATCTTCTTTTGAAACTACAGTTGATGTTGAGGAAGGAATGGAGTTCGACAGGGGGTACATATCTCCGCAATTCGTCACAAATGCAGAGAAGTTGATTGTAGAGTTTGAAAATGCTCGAATCTTGATCACTGATCAAAAAATTTCAACCATCAAAGAGATTGTCCCTTTATTAGAAAAGACCACACAGTTGAGAGCACCTTTGGTCATAATAGCAGAAGATCTCTCGGGGGAGGCATTGGCTACTTTAGTTGTGAATAAATTGCGTGGAGTAATCAATGTTGCTGCTGTCAAGGCACCAAGCTTTGGGGAGAGAAGAAAGGCTCTTCTCCAGGATATTGCTATTCTTACAGGTGCGGAATTCATAGCTGGTGATTTGGGTATGAAGGTTGAGAATACATCAGAAGAGCAGCTTGGTATTGCCAGAAAAGTCACCATAGCGAAAGGCTCGACGACAATAATCTCTGATGCTGCCAGTAAAGATGAAATTCAAGAAAGAATTGCACAAATTAAGAAAGAGCTAGCCGAGACAGATTCTGTCTATGACACGGAAAAATTGTCAGAAAGAATTGCAAAGCTCTCAGGAGGAGTGGCAGTTATTAAGGTTGGAGCGGCTACAGAGGCCGAACTTGAGGATAAACAACTTAGGATTGAAGATGCCAAAAATGCTACCTTTGCTGCAATTCAAGAAGGAATTGTGCCAGGAGGAGGAGCAGCTTTTGTTCATTTATCCTCTTATGTGCCTGCTATAAAAGAAACCATAGAAGATCCAGATGAACGCATTGGTGCTGATATTGTACAGAAGGCCCTTATGTCTCCAGCTGCATTAATTGCAAATAATGCGGGTGTGGAAGGAGATGTCGTGGTCGAGAAAATTCTGGCGCGTGATTGGGAGATGGGATATAATGCAATGACAGACGTATACGAAAATCTACTTAATTCTGGCGTGATAGACCCTGCAAAGGTTGCAAGGTGTGCACTGCAGAATGCAGCCTCTGTTGCAGGCATGGTCCTTACAACCCAGGCCATCGTAGTTGAGAAGCCTAAAAAGCCGGTGTATGCTGCTCCTGCTCCTACTCAGGGGATGACCATTTAGATTAGCTCTCTACAATGTTGAGGTTGAAATTGAGGACTGGGCATATGTTTCTGCGGCTGTGAGACATCAAAGTTTGGTGCTCACTTCCATTGTGCAGAGGCTGCCCGATTTTGGAAGAGAGGATTATCTGAATTATTTATGAGGTGTAAAAAAATTATAGTGATGCTAATCAAACATCCTTATTCAATCTCTTTTACAATTGATTATTCTATCGTTCCAGTTCGCACAGGAGATCAAGCATACTTTCCCTTGCAAGGTAGGGTAAAATATAGGAAACCAGGGGTTACAGGATACGTGTATTTTGATCTGAGTTTTATGTTGAACTTGAGGTGAAAAGAATTTGCTTCGTGGCGAATGTATTTTGCAAT

Ace file of the UniGene biog3_v1.0_unigene7667

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15865	195/198
SustainPine v2.0	sp_v2.0_unigene81509	1/198

Source	Descriptions	Term	Type	Identity
AutoFact	RuBisCO large subunit-binding protein subunit alpha, chloroplastic n=9 Tax=fabids RepID=RUBA_PEA	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	rubisco subunit binding-protein alpha subunit	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	91%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQV7

Fln msg:

Fln protein: MATNAAFTFAGALNLFQPTAQPDGLRSRKTAFCQRPIGPLQFRAKHRTRSNSRVLVRASAKDILFDQASRAAVQRGIDKLADAVGVTLGPRGRNVVLDELGIPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREMIKLGLMNVTAGANPVSLKKGIDKTVQSLVEELQKNARAVKGRDDIKAVATISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILITDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLSGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGAEFIAGDLGMKVENTSEEQLGIARKVTIAKGSTTIISDAASKDEIQERIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKETIEDPDERIGADIVQKALMSPAALIANNAGVEGDVVVEKILARDWEMGYNAMTDVYENLLNSGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKPKKPVYAAPAPTQGMTI*

Protein Length: 601

Fln nts: TACGCGGGAGTCAAGCGTAGCCAGCTTCCTACTTCCTGAGGTTTTACGAAATTCACACTAGGGTTTAAGATCCACTGAAGTAGATCAAAGCTCTGCC_-_ATGGCAACCAACGCGGCCTTCACCTTCGCGGGGGCACTGAACCTGTTTCAGCCCACAGCTCAACCAGATGGTCTGAGGAGCAGAAAGACGGCATTTTGTCAAAGGCCGATAGGTCCTCTTCAATTTAGAGCGAAACATCGAACGAGGAGCAACAGCAGGGTCTTGGTGAGGGCGTCGGCCAAGGATATATTGTTCGATCAGGCTTCGCGTGCAGCGGTGCAGAGGGGCATTGATAAATTGGCAGATGCCGTGGGCGTTACATTGGGGCCCAGAGGGCGGAATGTTGTATTGGACGAGCTTGGAATACCGAAGGTGGTGAATGATGGAGTTACCATCGCTCGTGCCATTGAGCTTGCTGACCCCATGGAAAATGCTGGGGCGGCCTTAATCCGAGAGGTTGCAAGTAAGACGAATGACTCAGCTGGTGATGGGACAACTACGGCATCAGTTTTGGCTCGGGAGATGATCAAACTAGGTCTTATGAATGTAACAGCGGGAGCAAATCCGGTTTCCTTGAAGAAAGGAATAGACAAGACTGTGCAGAGCCTAGTCGAAGAGCTACAGAAGAACGCCAGGGCTGTAAAAGGGCGAGATGATATCAAGGCGGTGGCCACGATTTCATCTGGGAATGATGATTTTGTGGGAACTATGATTGCTGATGCAATAGATAAGGTTGGGCCAGATGGAGTTCTGTCCATTGAGTCTTCATCTTCTTTTGAAACTACAGTTGATGTTGAGGAAGGAATGGAGTTCGACAGGGGGTACATATCTCCGCAATTCGTCACAAATGCAGAGAAGTTGATTGTAGAGTTTGAAAATGCTCGAATCTTGATCACTGATCAAAAAATTTCAACCATCAAAGAGATTGTCCCTTTATTAGAAAAGACCACACAGTTGAGAGCACCTTTGGTCATAATAGCAGAAGATCTCTCGGGGGAGGCATTGGCTACTTTAGTTGTGAATAAATTGCGTGGAGTAATCAATGTTGCTGCTGTCAAGGCACCAAGCTTTGGGGAGAGAAGAAAGGCTCTTCTCCAGGATATTGCTATTCTTACAGGTGCGGAATTCATAGCTGGTGATTTGGGTATGAAGGTTGAGAATACATCAGAAGAGCAGCTTGGTATTGCCAGAAAAGTCACCATAGCGAAAGGCTCGACGACAATAATCTCTGATGCTGCCAGTAAAGATGAAATTCAAGAAAGAATTGCACAAATTAAGAAAGAGCTAGCCGAGACAGATTCTGTCTATGACACGGAAAAATTGTCAGAAAGAATTGCAAAGCTCTCAGGAGGAGTGGCAGTTATTAAGGTTGGAGCGGCTACAGAGGCCGAACTTGAGGATAAACAACTTAGGATTGAAGATGCCAAAAATGCTACCTTTGCTGCAATTCAAGAAGGAATTGTGCCAGGAGGAGGAGCAGCTTTTGTTCATTTATCCTCTTATGTGCCTGCTATAAAAGAAACCATAGAAGATCCAGATGAACGCATTGGTGCTGATATTGTACAGAAGGCCCTTATGTCTCCAGCTGCATTAATTGCAAATAATGCGGGTGTGGAAGGAGATGTCGTGGTCGAGAAAATTCTGGCGCGTGATTGGGAGATGGGATATAATGCAATGACAGACGTATACGAAAATCTACTTAATTCTGGCGTGATAGACCCTGCAAAGGTTGCAAGGTGTGCACTGCAGAATGCAGCCTCTGTTGCAGGCATGGTCCTTACAACCCAGGCCATCGTAGTTGAGAAGCCTAAAAAGCCGGTGTATGCTGCTCCTGCTCCTACTCAGGGGATGACCATTTAG___ATTAGCTCTCTACAATGTTGAGGTTGAAATTGAGGACTGGGCATATGTTTCTGCGGCTGTGAGACATCAAAGTTTGGTGCTCACTTCCATTGTGCAGAGGCTGCCCGATTTTGGAAGAGAGGATTATCTGAATTATTTATGAGGTGTAAAAAAATTATAGTGATGCTAATCAAACATCCTTATTCAATCTCTTTTACAATTGATTATTCTATCGTTCCAGTTCGCACAGGAGATCAAGCATACTTTCCCTTGCAAGGTAGGGTAAAATATAGGAAACCAGGGGTTACAGGATACGTGTATTTTGATCTGAGTTTTATGTTGAACTTGAGGTGAAAAGAATTTGCTTCGTGGCGAATGTATTTTGCAAT

Fln Alignment:

Contig7667___MATNAAFTFAGALNLFQPTAQPDGLRSRKTAFCQRPIGPLQFRAKHRTRSNSRVLVRASAKDILFDQASRAAVQRGIDKLADAVGVTLGPRGRNVVLDELGIPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREMIKLGLMNVTAGANPVSLKKGIDKTVQSLVEELQKNARAVKGRDDIKAVATISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILITDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLSGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGAEFIAGDLGMKVENTSEEQLGIARKVTIAKGSTTIISDAASKDEIQERIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKETIEDPDERIGADIVQKALMSPAALIANNAGVEGDVVVEKILARDWEMGYNAMTDVYENLLNSGVIDPAKVARCALQNAASVAGMVLTTQAI
B8LQV7_________________MATNSAFTFAAALSLFQPTAQPDGLGSRKMAFCQRPIAPRQFRAKYRARSNSRVLVRASAKDILFDQDSRASVQRGIDKLADAVGVTLGPRGRNVVLDEFGMPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTAAVLAREIIKLGLMNVTAGANPVALKKGIDKTVQGLVEELQKKATPVKGRDDIKAVASISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILVTDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLTGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGADFIAGDLGMKVENTEVEQLGTARKITIAKGSTTIISDAASKDEIQARIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGATTEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKQTIEDPDERIGADIVQKALVSPAALIANNAGVEGDVVVEKILTSDWEMGYNAMTDTYENLLNSGVIDPSKVARCALQNAASVAGMVLTTQAI

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
38	33		66		1.0
40			33	66	1.0
84	16			83	0.994512
86			83	16	0.994512
87	83		16		0.994512
164	33	66			1.0
165		66		33	1.0
166	66		33		1.0
167			66	33	1.0
169	14			85	0.993533
170			85	14	0.993533
173	14	85			0.993533
174	14			85	0.993533
178			85	14	0.993533
182	85		14		0.993533
183			85	14	0.993533
186	85			14	0.993533
187		14	85		0.993533
189	14	85			0.993533
190		14	85		0.993533
194	16			83	0.994512
195			16	83	0.994512
197	16			83	0.994512
198		16	83		0.994512
199			16	83	0.994512
201	83		16		0.994512
202	83		16		0.994512
203	83		16		0.994512
274	20		80		0.995493
275	20			80	0.995493
276		80		20	0.995493
278			75	25	0.996473
672	11	88			0.999952
676			88	11	0.999952
677	5		82	11	0.999919
1329		88		11	0.999952
1467	90			9	0.999872
1468	85			14	1.0
1563		90		10	0.90298
1564		90		10	0.90298
1588	12			87	0.992554
1589		12	87		0.992554
1590	12		87		0.992554
1592			87	12	0.992554
1599		14		85	0.993533
1600	14			85	0.993533
1601			85	14	0.993533
1606			83	16	0.994512
1622	16	83			0.994512
1626		83		16	0.994512
2171	80		20		0.995493
2202		20		80	0.995493
2203	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain