SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7626

Length: 481 nt

UniGene Fasta

>biog3_v1.0_unigene7626
CTTCATGTATCATTACAATGTCGTTAGGAACTGACAAAGAAGGAAAACCAAAATATGTTATTCGTCCGTATACTCCTATTTCTGATCCGGAATCAAAGGGATATTTTGATTTGCTAATCAAGGCATACCCTGAAGGAAAATGAGCCAGCATTTTGCACAACTAAAGCCAGGGGACACACTTGATGTGAAAGGGCCCATTGAAAAGCTTCCATACCATCCTAACATGAAGAAACATATTGGAATGGTTGCGGGAGGAACAGGAATAACCCCCATGCTACAGATTATTGATGCTATTCTTAAAAATCCAGAGGATATCACGAAGGTATCTCTATTATACGCCAATGTATCTCCGGATGATATATTACTTAAAGAGAAGCTGGATGCCCTTTCTTCTAGCCACCCAAATTTCAAGGTTTACTATGTTGTGGATAAACCAGTGAGTGGGTGGAGAGGTGGGGTTGGTTACATATCAAAGGACATT

Ace file of the UniGene biog3_v1.0_unigene7626

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1695	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-cytochrome b5 reductase-like protein [Arabidopsis thaliana] sp\|P83291.2\|NCB5R_ARATH RecName: Full=NADH-cytochrome b5 reductase-like protein; Short=B5R gb\|AAM64833.1\| cytochrome-b5 reductase-like protein [Arabidopsis thaliana] gb\|ABD59058.1\| At5g20080	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	nadh-cytochrome b5 reductase-like protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cytochrome-b5 reductase.	EC:1.6.2.2	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	cytochrome-b5 reductase activity	GO:0004128	Molecular Function	81%
Blast2go	copper ion binding	GO:0005507	Molecular Function	81%
Blast2go	mitochondrial intermembrane space	GO:0005758	Cellular Component	81%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	NADH:cytochrome b5 reductase (CBR)	IPR001834	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Moybdenum cofactor oxidoreductase, dimerisation	IPR005066	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Eukaryotic molybdopterin oxidoreductase	IPR008335	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Nitrate reductase NADH dependent	IPR012137	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRC8

Fln msg: Overlapping hits, possible frame ERROR between 209 and 98, Distance to subject end: 43 aas, your sequence is shorter than subject: 160 - 281

Fln protein: SCIITMSLGTDKEGKPKYVIRPYTPISDPESxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYHPNMKKHIGMVAGGTGITPMLQIIDAILKNPEDITKVSLLYANVSPDDILLKEKLDALSSSHPNFKVYYVVDKPVSGWRGGVGYISKDI

Protein Length: 161

Fln nts: CTTCATGTATCATTACAATGTCGTTAGGAACTGACAAAGAAGGAAAACCAAAATATGTTATTCGTCCGTATACTCCTATTTCTGATCCGGAATCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTACCATCCTAACATGAAGAAACATATTGGAATGGTTGCGGGAGGAACAGGAATAACCCCCATGCTACAGATTATTGATGCTATTCTTAAAAATCCAGAGGATATCACGAAGGTATCTCTATTATACGCCAATGTATCTCCGGATGATATATTACTTAAAGAGAAGCTGGATGCCCTTTCTTCTAGCCACCCAAATTTCAAGGTTTACTATGTTGTGGATAAACCAGTGAGTGGGTGGAGAGGTGGGGTTGGTTACATATCAAAGGACATT

Fln Alignment:

Contig7626___GTDKEGKPKYVIRPYTPISDPESKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPYHPNMKKHIGMVAGGTGITPMLQIIDAILKNPEDITKVSLLYANVSPDDILLKEKLDALSSSHP-NFKVYYVVDKPVSGWRGGVGYISKDI
A9NRC8_________________GKDAEGEE--VLKPYTPTTLDSDVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKYQPGQVRAFGMLAGGSGITPMFQVTRAILENPKDKTNVYLIYGNVTYEDILLKDELDSLMKNYPGRFRVYHVLNQPPEGWTGGVGFVSKEM

SNPs (tot: 4)

Position	A %	G %	T %	Probability
186	16	83		0.994512
254	16	83		0.994512
255		83	16	0.994512
256		83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain