SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7619

Length: 1234 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7619

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3630	24/25

Source	Descriptions	Term	Type	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaAFB4A n=2 Tax=Pinus taeda RepID=C9EHS9_PINTA	-	-	75%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaAFB4A; Pinus taeda (Loblolly pine).	-	-	76%
Blast2go	f-box family protein	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	76%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	76%
Blast2go	receptor activity	GO:0004872	Molecular Function	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	76%
Blast2go	inositol hexakisphosphate binding	GO:0000822	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C9EHS9

Fln msg: your sequence is shorter than subject: 337 - 585

Fln protein: NVLHINVTGCFSYDFIPEQATVLQVAFNNCKSLQCLSGFREVVPEYLPTIYSVCNNLLELNLSYAVMGSRELEQIVCNCPKLQRLWVLDSVEDAGLRAAAATCKDLRDLRVFPMDAREDGNGCVSDEGLVAISEGCPNLQSILYFCQRMTNAAVVTMSKNCQNLTSFRLCIMGRHKPDHITHKPMDEGFGAIVMNCKKLTRLGVSGLLTNKAFEYIGTYGESLETLSVAFAGDNDLGMKYVLDGCRRLQKLEIRDSPFGDTALLSGLHHYEQMRFLWMSDCKVSIQGCMELARKMPWLNVEIIRENSYDDCLVEKLYVYRSVAGPRKDMPPIVITL*

Protein Length: 338

Fln nts: AATGTCTTACACATTAATGTAACAGGCTGTTTCTCCTATGATTTTATACCGGAGCAAGCAACAGTTCTTCAGGTTGCCTTCAACAATTGCAAGTCACTTCAGTGTTTGTCAGGATTTCGGGAAGTTGTTCCTGAGTATCTGCCAACAATCTATTCTGTTTGCAATAACTTACTGGAGCTGAACTTGAGCTATGCTGTTATGGGTAGCAGGGAGTTGGAGCAGATTGTCTGCAATTGTCCAAAATTGCAGCGTCTTTGGGTTTTAGACTCAGTGGAAGATGCAGGTCTACGGGCTGCTGCTGCAACCTGTAAGGACTTGAGGGATCTCCGAGTGTTTCCCATGGATGCAAGAGAGGATGGGAATGGTTGTGTATCTGATGAGGGTCTGGTTGCCATTTCAGAAGGATGTCCAAATCTCCAGTCAATACTTTACTTTTGTCAGCGTATGACAAATGCAGCAGTTGTGACCATGTCAAAAAACTGTCAGAACCTTACCAGCTTTCGACTCTGTATCATGGGTCGGCACAAACCTGATCATATTACTCATAAACCAATGGATGAAGGATTCGGTGCCATTGTAATGAACTGCAAAAAACTGACGAGGTTGGGAGTGTCTGGCCTTCTGACCAATAAAGCATTTGAATACATTGGGACGTATGGAGAATCATTAGAGACCTTATCAGTGGCATTTGCTGGGGATAATGATTTAGGCATGAAGTATGTTCTTGATGGATGCAGACGTCTACAGAAGCTTGAAATAAGGGACAGCCCTTTTGGAGATACTGCCCTTTTGTCTGGTTTACATCATTATGAGCAAATGCGATTTTTATGGATGTCTGATTGCAAGGTCAGTATACAGGGTTGCATGGAGCTAGCAAGAAAAATGCCATGGCTGAATGTGGAGATAATCAGAGAAAATAGCTACGATGACTGCCTTGTGGAAAAACTTTATGTATATCGTTCTGTAGCAGGGCCTCGTAAAGACATGCCACCAATCGTAATTACTCTGTAG___CCATTTCTTGTCCAATTTTGTGGCAATGGCCATGTACTATTTGGGTGAATCTGTAAGCAACCGTGCTTTCAATTCTTCATGTCCAGTGGTTGTAGGGGTCGAGTCCTTGTACATATTTCTTTTACAAGTGCAGTGGAGTAGGAGGTCAAATTGGCAATATTCTTTGGCATTTCCTTCAGGGTGATGCTGAAAAGGTGGAGGACGACCAATGAATGCTCTATGC

Fln Alignment:

Contig7619___TGCFSYDFIPEQATVLQVAFNNCKSLQCLSGFREVVPEYLPTIYSVCNNLLELNLSYAVMGSRELEQIVCNCPKLQRLWVLDSVEDAGLRAAAATCKDLRDLRVFPMDAREDGNGCVSDEGLVAISEGCPNLQSILYFCQRMTNAAVVTMSKNCQNLTSFRLCIMGRHKPDHITHKPMDEGFGAIVMNCKKLTRLGVSGLLTNKAFEYIGTYGESLETLSVAFAGDNDLGMKYVLDGCRRLQKLEIRDSPFGDTALLSGLHHYEQMRFLWMSDCKVSIQGCMELARKMPWLNVEIIRENSYDDCLVEKLYVYRSVAGPRKDMPPIVITL
C9EHS9_________________TGSFFYEFQLEQVADLLAAFSNCKQLQCLSGFREVVPEYIPAVYPVCSNLTSLNFSYAVIGSRELEGIVCHCRKLQLLWVLDSVGDKGLEAAATTCKDLRDLRVFPVDAREDGEGCVSERGLVAISEGCPNLESILYFCQRMTNKAVVTMSHNCSKLASFRLCIMGRHQPDHLTGEPMDEGFGAIVRNCKSLTRLAVSGLLTDKAFQYFGAYGERLETLSVAFAGESDLSMKYVLDGCKNLRKLEIRDSPFGDVALLSGLHHYENMRFLWMSDCRLTLQGCTELAKKMPGLNVEIIRENECNDSLVEKLYAYRTVAGPRKDMPSFVTIL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
16	66			33	0.997452
20			33	66	0.997452
73			66	33	0.997452
252	20			80	0.995493
254	20			80	0.995493
831	10		90		0.90298
832		10	90		0.90298
872	14	85			0.993533
873		14		85	0.993533
875			85	14	0.993533
876		85		14	0.993533
892	12		87		0.992554
893	12	87			0.992554
896	87			12	0.992554
989	33	66			1.0
992		66		33	1.0
993		66		33	1.0
1147	33		66		0.997452
1148		33	66		0.997452
1150			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain