SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7552

Length: 303 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7552
AACCAGAAAATTCAACCGGTTCTCCAATGCAGATAGACAAAGAATCTCATCACATCAACAAAGGACTGCTATTGGCAATTATCATACTGCCAATATTTGTTGGATGTATCATGATTTCTTCAGTTTGTACTTGGTTGTATAGAAAGACTTACAACTCTGATCCTTCTTCACCTCAACCTCATGCATTCAAGCGAAATTTAGATCCAGACGCCTCAGATGCCTATAGGGGTATTCCACTCATGCCTCTCCTGAGTCGTTTGAACTCCCGTGTTTCTAAGAAGAAGGGATGTGCAACTGCAATTG

Ace file of the UniGene biog3_v1.0_unigene7552 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1485	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AEE85991.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	probable receptor-like protein kinase at1g80640-like	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	74%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	74%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA69

Fln msg: Distance to subject end: 336 aas, your sequence is shorter than subject: 100 - 587

Fln protein: PENSTGSPMQIDKESHHINKGLLLAIIILPIFVGCIMISSVCTWLYRKTYNSDPSSPQPHAFKRNLDPDASDAYRGIPLMPLLSRLNSRVSKKKGCATAI

Protein Length: 101

Fln nts: AACCAGAAAATTCAACCGGTTCTCCAATGCAGATAGACAAAGAATCTCATCACATCAACAAAGGACTGCTATTGGCAATTATCATACTGCCAATATTTGTTGGATGTATCATGATTTCTTCAGTTTGTACTTGGTTGTATAGAAAGACTTACAACTCTGATCCTTCTTCACCTCAACCTCATGCATTCAAGCGAAATTTAGATCCAGACGCCTCAGATGCCTATAGGGGTATTCCACTCATGCCTCTCCTGAGTCGTTTGAACTCCCGTGTTTCTAAGAAGAAGGGATGTGCAACTGCAATTG

Fln Alignment:

Contig7552___KESHHINKGLLLAIIILPIFVGCIMISSVCTWLYRKTYNSDPSSPQPHAFKRNLDPDASDAYRGIPLMPLLSRLNS-RVSKKKGCATAI
D5AA69_________________QEMQHLKVLSLVAIPITLLILGAILLFTYYTWVSRSRLCPVLPPSQPQALRKQSDNDDSDANNGMSIGPFLTRLSSFRTGKRKGCASAI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
84	20		80		0.995493
85	20		80		0.995493
86		80		20	0.995493
87	80		20		0.995493
196			75	25	0.996473
261		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain