SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7424

Length: 312 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7424
GCCATAATTGGATCTATATGCCACAGCTCAGACCAACCATTTGGGCAGCACTGCAATACAACAGGGGTTGCTAATATATCCTTTGCACAGTGGGTTGCAGTGATTCTGGTTTATACTTTTGTGTATCACATGCTGGAACCCCCTGAGGAGTTTTATGAGATTGTTCCCGAGGATTCCGAGATCGAAAGAGAGCCGATGGGGGATGCAAGCAGGCCTCTTCTGTTCGAAGCCGAGTGGCCTGGAATGCATCACAAGGAGACTGAGCATTGCAAGACACCATTCATTAGCTCGGATCTTCAGAAGCATGACATT

Ace file of the UniGene biog3_v1.0_unigene7424 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13514	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	auxin efflux carrier-like protein [Arabidopsis thaliana] gb\|AAG51701.1\|AC016972_20 hypothetical protein; 37307-38680 [Arabidopsis thaliana] gb\|AAK76667.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85106.1\| unknown protein [Arabidopsis thaliana] gb\|AEE3	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	auxin efflux carrier family protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	auxin polar transport	GO:0009926	Biological Process	81%
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	auxin:hydrogen symporter activity	GO:0009672	Molecular Function	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Ribose 5-phosphate isomerase, type A	IPR004788	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTN6

Fln msg: Distance to subject end: 215 aas, your sequence is shorter than subject: 104 - 452

Fln protein: AIIGSICHSSDQPFGQHCNTTGVANISFAQWVAVILVYTFVYHMLEPPEEFYEIVPEDSEIEREPMGDASRPLLFEAEWPGMHHKETEHCKTPFISSDLQKHDI

Protein Length: 105

Fln nts: GCCATAATTGGATCTATATGCCACAGCTCAGACCAACCATTTGGGCAGCACTGCAATACAACAGGGGTTGCTAATATATCCTTTGCACAGTGGGTTGCAGTGATTCTGGTTTATACTTTTGTGTATCACATGCTGGAACCCCCTGAGGAGTTTTATGAGATTGTTCCCGAGGATTCCGAGATCGAAAGAGAGCCGATGGGGGATGCAAGCAGGCCTCTTCTGTTCGAAGCCGAGTGGCCTGGAATGCATCACAAGGAGACTGAGCATTGCAAGACACCATTCATTAGCTCGGATCTTCAGAAGCATGACATT

Fln Alignment:

Contig7424___AIIGSICHSSDQPFGQHCNTTGVANISFAQWVAVILVYTFVYHMLEPPEEFYEIVPEDSEIEREPMGDASRPLLFEAEWPGMHHKETEHCKTPFIS
C0PTN6_________________AIVGSICHSSDQPFGQHCNTTGVAYISFAQWVAVILVYTFVYHMLEPPEEFYEIVPEDSEIEREPIGDASRPLLFEAEWPGMHHKETEHCKTPFIA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
25	33		66		0.997452
27			66	33	0.997452
28		66	33		0.997452
178		50		50	1.0
235	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain