SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7349

Length: 839 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7349 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1841	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] gb\|AAD46034.1\|AC007519_19 F16N3.20 [Arabidopsis thaliana] gb\|AEE32181.1\| MATE efflux family protein [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	multidrug resistance	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	fruit ripening	GO:0009835	Biological Process	77%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	77%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	77%
Blast2go	antiporter activity	GO:0015297	Molecular Function	77%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKL5

Fln msg: Separated hits, possible frame ERROR between 43 and 52, and possible frame ERROR between 378 and 387, STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 280 - 500

Fln protein: PGAAITLNLAWVIxxxxQLIYIMSGAFPGSWTGMSRLAFQDLPAFIRLSLASAVMLCLEFWYLMILIVLVGRLKNPEIAVDSISICMNLNGWEMMIALGFNAAVSVRVSNELGAGRPKAGQFAVVxxxxTSLMIGITCMIIIFGTRNEFPVAFTNSKEVMHAVSKLATLLALTMLLNSVQPVLSGVAVGAGWQWLVAYINLGCYYIVGVPLGLILGYKLDFGAMGIWGGMIGGTVLQTLILMFITYRTNWDREASQAEDRIKLGEFSSFNQRQFKELHWK

Protein Length: 281

Fln nts: GCCAGGAGCAGCCATAACTCTCAACCTTGCATGGGTGATAGTxxxxxxxxxGCAGCTGATATATATAATGTCGGGTGCCTTTCCTGGTTCATGGACTGGAATGTCACGGTTGGCATTCCAGGATTTGCCTGCCTTCATCAGGCTTTCCTTGGCTTCTGCTGTGATGCTATGCCTGGAGTTCTGGTATCTTATGATATTGATCGTTTTAGTTGGGCGCCTGAAAAATCCAGAAATTGCAGTAGACTCAATCTCCATTTGTATGAATTTGAACGGATGGGAAATGATGATAGCCCTCGGATTCAATGCTGCTGTCAGTGTGAGAGTGTCGAATGAACTTGGAGCTGGGCGCCCAAAGGCTGGACAGTTTGCAGTAGTGGxxxxxxxxxTGACCTCACTAATGATAGGAATAACATGTATGATCATTATTTTCGGCACCAGAAATGAATTTCCAGTGGCTTTTACGAATAGCAAGGAGGTTATGCATGCAGTATCCAAGCTAGCAACTTTGCTTGCACTGACAATGCTTCTCAACAGTGTGCAGCCAGTTCTATCCGGGGTGGCTGTAGGAGCAGGATGGCAATGGTTGGTGGCATATATAAATTTAGGATGCTATTACATTGTTGGGGTTCCTCTTGGTCTGATCTTGGGATACAAATTGGACTTTGGAGCAATGGGTATTTGGGGTGGCATGATTGGAGGAACAGTACTGCAGACTCTAATTCTTATGTTTATCACATATAGGACTAACTGGGACAGAGAGGCTTCACAAGCTGAAGATCGGATTAAACTTGGGGAGTTCAGTAGCTTCAATCAAAGACAGTTTAAGGAATTACACTGGAAG

Fln Alignment:

Contig7349___PGAAITLNLAWVIVxxxQLIYIMSGAFPGSWTGMSRLAFQDLPAFIRLSLASAVMLCLEFWYLMILIVLVGRLKNPEIAVDSISICMNLNGWEMMIALGFNAAVSVRVSNELGAGRPKAGQFAVVVxxxTSLMIGITCMIIIFGTRNEFPVAFTNSKEVMHAVSKXXXXXXXXXXLNSVQPVLSGVAVGAGWQWLVAYINLGCYYIVGVPLGLILGYKLDFXXXXXXXXXXXGTVLQTLILMFITYRTNWDREASQAEDRIKL
B8LKL5_________________PAAALVLNLSWWIIxxxQIGYVFSGACRDAWAGFSWSAFSNLGAFVRLSLASGVMLCLEAWYLYLLILLAGYLKNPTIAVDAISICMNLMGWEFMIAIGFNIAISVRVSNELGAGRPRAAKFSVIVxxxTTFLVGVVLMAIIFITRNEFAVAFTDSKVVMSAVAQLAPLLAFTMLLNSVQPVLSGVAIGAGWQALVAYINLACYYLFGVPLGCLLGYYFDLGVEGIWAGMISGTLLQTIILCIITYRTKWNKEANQAKARITL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
727	33	66			0.997452
728	33	66			0.997452
731			66	33	0.997452
733	66			33	0.997452
788		33		66	0.997452
791		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain