SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7265

Length: 1116 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7265

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7818	55/55

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NKR6_PICSI	-	-	94%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	proteasome subunit alpha	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Threonine endopeptidases.	EC:3.4.25.-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	92%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	threonine-type endopeptidase activity	GO:0004298	Molecular Function	92%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	92%
Blast2go	vacuole	GO:0005773	Cellular Component	92%
Blast2go	proteasome core complex, alpha-subunit complex	GO:0019773	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKR6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 27 aas, your sequence is shorter than subject: 223 - 250

Fln protein: MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRVTSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTREEAAELALRVISKSMETTAISPEKLELAELFCCLLEK*

Protein Length: 224

Fln nts: ACCTTAACATTTTTTTCTTTGAAGCAACGAGCAGAGGTGGAAGCTCTGCTGATTGTTTGTAGCATCTGATCATCAGAACGAGTTCGAGTAAAACCCTAAAGTTTCCTGTTCAAA_-_ATGTCTCGGCGATACGATAGTAGGACTACGATCTTCTCTCCCGAAGGTCGGTTATACCAGGTTGAATATGCCATGGAAGCTATTGGCAATGCTGGAGCAGCCGTTGGAATTTTGGCAAAAGACGGGGTTATACTGGCTGGGGAGAAACGGGTTACTTCCAAGCTTCTTCAGACCTCCAAATCGACAGAGAAAATGTACAAGGTCGATGATCACGTTGCCTGTGCGGTCGCTGGAATCATGGCAGACGCAAACATTTTGATTAACACTGCCAGAGTTCAGGCACAGAGGTACACCTTTGCGTACCAAGAGCCCATACCTGTTGAACAGTTGGTTCAATCCCTCTGTGATACAAAGCAAGGGTACACGCAATTTGGAGGGCTTCGGCCCTTTGGTGTTTCCTTTCTGTTTGCAGGCTGGGATAAGAATTATGGTTTCCAGCTTTGTATGAGTGACCCGAGTGGAAATTATGGAGGATGGAAGGCTGCAGGGATTGGTGCAAACAATCCAGTTGCGCAGACTATGTTGAGACAGGAATACAAGGATGATATGACTAGAGAGGAGGCTGCTGAGCTTGCACTGAGGGTGATCAGCAAGAGCATGGAGACGACTGCTATCTCTCCCGAGAAGTTGGAACTAGCGGAGCTTTTTTGTTGCCTTCTGGAGAAGTGA___AGTACCAGGTTTACTCGCCCGAATCTCTGTCTAAGCTACTAGAGAAATTGAATCTCGCTCAGCCCGCAGCAGAGGCTTCTTAATTTAATTTGGAAATGCATTCTAGAATGCCATGCTTGAGCTTATTGCTGTGAAGCACAATAGATGCTGGAATATGTGGACCTGCCTAAACTGCTGAAGCTATAATGTTTAATGAACATGGTTGCTTTATTTTCATTCCATATGCTAAAGTGAATTTTCCTTCGAAATTTCAGTTTTTTAAAGATGTGTTGGGCTATTCTGTTTATGTTTCCTTTGACATACTTAGTGAATTTGTGATATGGTGAATTGAAA

Fln Alignment:

Contig7265___MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRVTSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTREEAAELALRVISKSMETTAISP
A9NKR6_________________MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRITSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTKEEAAELALKVISKSMETTAISP

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
101	83			16	0.994512
182	14			85	0.993533
187		85		14	0.993533
297	11	88			0.923564
298			88	11	0.923564
302			88	11	0.923564
303	85			14	0.993533
669		13	86		0.999973
671			86	13	0.999973
672	86			13	0.999973
708	88			11	0.923564
709			88	11	0.923564
718		25	75		1.0
720		75		25	1.0
721			75	25	1.0
827	20		80		0.995493
829			80	20	0.995493
830	80		20		0.995493
831	80			20	0.995493
834	20			80	0.995493
835		20	80		0.995493
837	80			20	0.995493
857			75	25	0.996473
859	25		75		0.996473
860		25	75		0.996473
861	25	75			0.996473
885	87			12	0.992554
969		14		85	0.993533
971	85			14	0.993533
975	16			83	0.994512
976		16		83	0.994512
978	83			16	0.994512
1031	50	25			0.995533
1032	25	75			0.996473
1033	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain