SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7189

Length: 562 nt

UniGene Fasta

>biog3_v1.0_unigene7189
AATGTAAATCTCTTTAACACCTCAGCCTACAGAAGAAGACAGTGATGAAGAGCTGGAATATGCAGAGGCTGCTGCTGGTGTGACAGAAAGTCTAAAAAAACCCTTTTCAGTGGTTGAAAATGAAATTAATTGTCAAAATGGAAAACGAGATGAGCAGTCAATGGATGGACAAAGTTGGAATGTATTAGAGGTAGGGGTTACAGGTACTGGTTACAAATGGTCACTTGGAGAAACCAACCAAGAGGAAGAATGGAGGCATTCTGTTTCACCAATCCCTTACGAAAATATTCAGGAATTAATTCTCAAGAAACGATTCGATTTTGATGACACATCTCTTGATACAGTGCAAACACTAGGTGAATCCAAGCCTGACTCTGGGATTGCTGATGATGAATCTGAGAAGCCAGAGACTGCTTATTTTAATAAGGAGGTGGAGGAGACATTCCGAAGAGCTGTGTTAGAAGTTCCAGGTGTTGAGCAACATCATGTGATTATAGAAGTCAATAGTTTGAGGTTGGCATACGACAGGTCTTTCTCTGACTGTGCTGGAGCTCTCTACATT

Ace file of the UniGene biog3_v1.0_unigene7189

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3046	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb\|AAC12836.1\| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb\|AAM98194.1\| putative translation initiation factor eIF-2B epsilon subunit [A	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	41%
Blast2go	translation initiation factor eif-2b epsilon subunit	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Nucleotidyltransferases.	EC:2.7.7.-	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	76%
Blast2go	Lipopolysaccharide biosynthesis	00540	76%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	Identity
Blast2go	regulation of translational initiation	GO:0006446	Biological Process	76%
Blast2go	RNA metabolic process	GO:0016070	Biological Process	76%
Blast2go	nucleotidyltransferase activity	GO:0016779	Molecular Function	76%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	Chorismate synthase	IPR000453	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	eIF4-gamma/eIF5/eIF2-epsilon	IPR003307	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-
Sma3	Protein of unknown function DUF597	IPR006734	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7U5T4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 118 aas, your sequence is shorter than subject: 187 - 730

Fln protein: M*ISLTPQPTEEDSDEELEYAEAAAGVTESLKKPFSVVENEINCQNGKRDEQSMDGQSWNVLEVGVTGTGYKWSLGETNQEEEWRHSVSPIPYENIQELILKKRFDFDDTSLDTVQTLGESKPDSGIADDESEKPETAYFNKEVEETFRRAVLEVPGVEQHHVIIEVNSLRLAYDRSFSDCAGALYI

Protein Length: 188

Fln nts: AATGTAAATCTCTTTAACACCTCAGCCTACAGAAGAAGACAGTGATGAAGAGCTGGAATATGCAGAGGCTGCTGCTGGTGTGACAGAAAGTCTAAAAAAACCCTTTTCAGTGGTTGAAAATGAAATTAATTGTCAAAATGGAAAACGAGATGAGCAGTCAATGGATGGACAAAGTTGGAATGTATTAGAGGTAGGGGTTACAGGTACTGGTTACAAATGGTCACTTGGAGAAACCAACCAAGAGGAAGAATGGAGGCATTCTGTTTCACCAATCCCTTACGAAAATATTCAGGAATTAATTCTCAAGAAACGATTCGATTTTGATGACACATCTCTTGATACAGTGCAAACACTAGGTGAATCCAAGCCTGACTCTGGGATTGCTGATGATGAATCTGAGAAGCCAGAGACTGCTTATTTTAATAAGGAGGTGGAGGAGACATTCCGAAGAGCTGTGTTAGAAGTTCCAGGTGTTGAGCAACATCATGTGATTATAGAAGTCAATAGTTTGAGGTTGGCATACGACAGGTCTTTCTCTGACTGTGCTGGAGCTCTCTACATT

Fln Alignment:

Contig7189___ISLTPQPTXXXXXXXXXXXXXXXGVTESLKKPFSVVENEINCQNGKRDEQSMDGQSWNVLEVGVTGTGYKWSLGETNQEEEWRHSVSPIPYENIQELILKKRFDFDDTSLDTVQTL--GESKPDSGI-----ADDESEKPETAYFNKEVEETFRRAVLEVPGVEQHHVIIEVNSLRLAYDRSFSDCAGALY
D7U5T4_________________VSLLQQPTKQDSDEELEYADHNSGVEE-----IPSITSTVDKLNGVLTCKLPETEAWSTSEVGSGGVGYIWSICEGGHEEEWRHSVAPTPADKLTEVMQATDDDLELTTQGSNVLLPSGELVPDSNSNISEDDDNEDSRDDSVYFEKEVEATFLRAVHE--NVKEDHVILEVNSLRLSYNMTSADCAGALF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain