SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7172

Length: 1097 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7172

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene243	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	tocopherol cyclase [Eucalyptus gunnii]	-	-	65%
FL-Next	sp=Probable tocopherol cyclase, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	66%
Blast2go	tocopherol cyclase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	79%
Blast2go	fatty acid metabolic process	GO:0006631	Biological Process	79%
Blast2go	chlorophyll metabolic process	GO:0015994	Biological Process	79%
Blast2go	vitamin E biosynthetic process	GO:0010189	Biological Process	79%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	79%
Blast2go	regulation of defense response	GO:0031347	Biological Process	79%
Blast2go	xanthophyll metabolic process	GO:0016122	Biological Process	79%
Blast2go	response to high light intensity	GO:0009644	Biological Process	79%
Blast2go	phloem sucrose loading	GO:0009915	Biological Process	79%
Blast2go	tocopherol cyclase activity	GO:0009976	Molecular Function	79%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	79%
Blast2go	plastoglobule	GO:0010287	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q6K7V6

Fln msg: Overlapping hits, possible frame ERROR between 114 and 114, query STOP codon is far from subject stop. Distance to subject end: 24 aas, your sequence is shorter than subject: 327 - 470

Fln protein: NVIGAQILGPEEKYICQYSNEVQYFWGSRHELALGNTxxPKKGSSPPKREINPEEFCRRVEEGFQVTPIWHQGFIRDDGRSSYVQTVKTARWQYSTRPVYGWGDVSSKQKATAGWLAAFPVFEPHWQICMAGGLSTGWIEWEDQRYEFENAPSYSEKNWGGSFPQRWFWVQCNVFEGAVGEVALTAGGGRRSLPGFPNTYEELAMVGVHYDGKLFEFVPWNGVVEWEISPWGYWQMIAHNGLYEVELVATTKSNGTVLRAPTNEAGLVPFCKDTCYGDLKLKIWEHTKNHQRGKVILDVSSDLAALEVGGGPWYNTWKNKAHRPHY*

Protein Length: 328

Fln nts: AATGTAATAGGAGCTCAAATACTCGGTCCAGAAGAGAAGTATATTTGCCAATACTCAAATGAGGTTCAATATTTTTGGGGAAGCAGGCATGAGTTGGCTCTAGGAAATACCxxxxxxCCAAAGAAAGGTTCATCACCACCAAAGAGGGAGATAAATCCAGAGGAATTTTGCAGAAGGGTAGAGGAAGGATTCCAAGTTACTCCAATTTGGCACCAAGGATTTATTCGTGACGATGGAAGGTCTAGTTATGTGCAGACAGTGAAGACTGCACGTTGGCAATACAGTACCAGGCCTGTATATGGATGGGGTGATGTTAGTTCTAAACAAAAGGCAACGGCAGGTTGGTTAGCAGCGTTTCCCGTTTTCGAACCCCATTGGCAAATATGCATGGCAGGTGGTCTTTCCACAGGATGGATAGAGTGGGAAGATCAGAGGTATGAATTTGAGAATGCACCATCATATTCGGAGAAGAACTGGGGCGGTTCCTTTCCACAAAGGTGGTTCTGGGTTCAATGCAATGTGTTTGAGGGTGCTGTTGGAGAGGTTGCATTGACTGCAGGTGGTGGGAGAAGATCACTTCCAGGATTTCCTAATACATACGAGGAACTAGCTATGGTAGGAGTTCATTATGATGGAAAATTATTTGAATTTGTGCCATGGAATGGTGTTGTTGAGTGGGAGATTTCCCCATGGGGTTATTGGCAGATGATAGCTCACAATGGTTTGTATGAGGTTGAACTGGTAGCAACAACAAAATCAAATGGCACAGTTTTGCGAGCTCCAACAAATGAAGCTGGTCTTGTGCCTTTCTGTAAGGATACATGTTATGGCGATCTTAAATTAAAGATATGGGAGCATACTAAAAACCATCAGCGAGGCAAGGTCATTCTTGATGTCAGTAGTGATTTGGCAGCACTTGAAGTGGGTGGAGGACCATGGTACAATACTTGGAAAAACAAAGCTCATCGCCCTCATTACTAAGACAACTCCTAGGGCTTCCATTAGATGTTGAGGAGATATTTAACCCTTTGCCAATAGTGAAGCCACCTGGCCTTTAGAGTACAGAACTCTTCTTATTGGCAGAAATAAAGATTTCAA

Fln Alignment:

Contig7172___IGAQILGPEEKYICQYSNEVQYFWGSRHELALGNTFLPKKGSSPPKREINPEEFCRRVEEGFQVTPIWHQGFIRDDGRSSYVQTVKTARWQYSTRPVYGWGDVSSKQKATAGWLAAFPVFEPHWQICMAGGLSTGWIEWEDQRYEFENAPSYSEKNWGGSFPQRWFWVQCNVFEGAVGEVALTAGGGRRSLPGFPNTYEELAMVGVHYDGKLFEFVPWNGVVEWEISPWGYWQMIAHNGLYEVELVATTKSNGTVLRAPTNEAGLVPFCKDTCYGDLKLKIWEHTKNHQRGKVILDVSSDLAALEVGGGPWYNTWK
Q6K7V6_________________VGAQILGADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKI-GLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
179	33		66		1.0
180	33		66		1.0
182	66		33		1.0
183			66	33	1.0
226	12			87	0.992554
316	33			66	1.0
317		33		66	1.0
450	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain