SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7077

Length: 406 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7077
AATGTACAGAGAAATTGATATATATTCTTTGTATGCACATTTACCTCTGAGTTGAATCTGACAGAAGAGTGGAGAAATCATTCTGAATGGCTTTCTCAACACGTGTGGGCAAGTATGAGCTGGGGCGTGAGCTTGGTGAAGGAACGTTTGCCAAGGTGAAAGTGGCCAGGAATATTGAGACAGGCCAAAATGTTGCAGTTAAGATCATAGATAAGCAGATGATACTCCGCAGAAACCTTACCCATCAGGTCAAACGAGAGATTAGCACGATGAAGCTGGTTAAGCATCCCAATATTGTGCGCCTGTACGAGGTTTTGGCCAGCAAGAGGAGGATTTATCTTATCCTGGAATATGTAACAGGGGGTGACCTCTCTGACAAAATTGCTTATCTTCAGAAAATAACATT

Ace file of the UniGene biog3_v1.0_unigene7077 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5807	6/8
SustainPine v2.0	sp_v2.0_unigene65680	2/8

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 14 n=2 Tax=Vitis vinifera RepID=C4P7W3_VITVI	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	signal transduction	GO:0007165	Biological Process	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT62

Fln msg: Distance to subject end: 172 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 106 - 288

Fln protein: MAFSTRVGKYELGRELGEGTFAKVKVARNIETGQNVAVKIIDKQMILRRNLTHQVKREISTMKLVKHPNIVRLYEVLASKRRIYLILEYVTGGDLSDKIAYLQKIT

Protein Length: 107

Fln nts: AATGTACAGAGAAATTGATATATATTCTTTGTATGCACATTTACCTCTGAGTTGAATCTGACAGAAGAGTGGAGAAATCATTCTGA_-_ATGGCTTTCTCAACACGTGTGGGCAAGTATGAGCTGGGGCGTGAGCTTGGTGAAGGAACGTTTGCCAAGGTGAAAGTGGCCAGGAATATTGAGACAGGCCAAAATGTTGCAGTTAAGATCATAGATAAGCAGATGATACTCCGCAGAAACCTTACCCATCAGGTCAAACGAGAGATTAGCACGATGAAGCTGGTTAAGCATCCCAATATTGTGCGCCTGTACGAGGTTTTGGCCAGCAAGAGGAGGATTTATCTTATCCTGGAATATGTAACAGGGGGTGACCTCTCTGACAAAATTGCTTATCTTCAGAAAATAACATT

Fln Alignment:

Contig7077___TRVGKYELGRELGEGTFAKVKVARNIETGQNVAVKIIDKQMILRRNLTHQVKREISTMKLVKHPNIVRLYEVLASKRRIYLILEYVTGGDLSDKI
C0PT62_________________TRVGKYELGRTLGEGTFAKVKFAKNTENGENVAIKILDKENILKHKMVEQIKREISTMKLIKHPNVIRLHEVMASKTKIYIVLDFVNGGELFDKI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
114	75		25		0.996473
119	50		50		1.0
138	20	80			0.995493
139	20		80		0.995493
156	14		85		0.993533
158		85	14		0.993533
159		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain