SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7076

Length: 1215 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7076

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9397	18/28
SustainPine v2.0	sp_v2.0_unigene26601	7/28
SustainPine v2.0	sp_v2.0_unigene65653	3/28

Source	Descriptions	Term	Type	Identity
AutoFact	Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	alkaline alpha galactosidase i	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	83%
Blast2go	Galactinol--sucrose galactosyltransferase.	EC:2.4.1.82	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	83%
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		83%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		83%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		83%
Blast2go	Glycosaminoglycan degradation	00531		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Galactinol--raffinose galactosyltransferase.	EC:2.4.1.67	-	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	sucrose biosynthetic process	GO:0005986	Biological Process	83%
Blast2go	mannitol biosynthetic process	GO:0019593	Biological Process	83%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	83%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	83%
Blast2go	response to water deprivation	GO:0009414	Biological Process	83%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	83%
Blast2go	signal transduction	GO:0007165	Biological Process	83%
Blast2go	raffinose family oligosaccharide biosynthetic process	GO:0010325	Biological Process	83%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	83%
Blast2go	galactinol-sucrose galactosyltransferase activity	GO:0047274	Molecular Function	83%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	galactinol-raffinose galactosyltransferase activity	GO:0047268	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEI9

Fln msg: atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 322 - 338

Fln protein: MSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMGEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVIGVFNCQGAGWCRVDKKNLVHDSQPKAITGAIRSMDVDYLPKVADENWDGDSVVYSHRGGELVCLPKGAALPITLKAREYEVFTVVPLKGLANGISFAPIGLIKMFNSGGAISAYEFDPNTSTVYLKVRGCGDFGAYCSVRPQAVYVDSTQIGFSYEEECGLTTFTLKVPETELYLWDIRIDI*

Protein Length: 323

Fln nts: AATGTGGGATAATTGCTTGT_-_ATGAGTCATAACACTGATGGTCTTTACAGTTCGAAACAGACTGCCGTTATAAGAGCCTCCGATGATTTCTGGCCAAGGGATCCTGCGTCACATACCATTCATATTGCTTCTGTAGCCTACAACAGCGTTTTCTTGGGAGAGTTTATGCAGCCTGATTGGGATATGTTCCATAGTCTTCATCCAATGGGTGAATACCATGCCGCTGCTCGAGCTGTTGGGGGGTGCTCAATTTATGTCAGCGACAAACCTGGTGAACATGATTTTGACTTGTTGAAGAAGATCGTTCTTCCAGATGGATCCTTATTACGAGCACAGCTTCCAGGAAGGCCTACAAAAGATTGCTTGTTTACTGATCCAGCTCGTGATGGGACAAACCTCCTAAAACTTTGGAACTTGAACAAGCATACTGGAGTTATCGGTGTCTTCAATTGTCAAGGTGCCGGGTGGTGCAGGGTTGACAAAAAGAATCTGGTTCACGATTCCCAACCCAAAGCTATTACTGGTGCCATTCGCTCAATGGATGTAGATTATTTACCAAAAGTTGCAGATGAAAATTGGGACGGTGATTCCGTTGTATACTCTCACAGAGGGGGAGAGCTTGTCTGTCTTCCTAAAGGTGCAGCTTTACCGATTACTCTCAAAGCACGGGAGTATGAAGTTTTCACAGTTGTTCCTCTAAAGGGGTTAGCCAACGGCATCTCTTTTGCTCCCATTGGACTGATCAAAATGTTCAACTCCGGAGGAGCTATTAGTGCATATGAGTTCGATCCAAACACCTCAACAGTGTATTTGAAGGTTCGAGGTTGCGGGGATTTCGGAGCATATTGTTCTGTGAGGCCACAAGCCGTGTACGTGGATTCTACTCAGATAGGATTCAGCTATGAAGAAGAATGTGGTCTGACCACTTTCACATTGAAAGTGCCAGAAACAGAATTATATTTATGGGACATCAGAATTGACATATAA___ATGTTTTAACCAGTTTAGATTTAGGTGCTCTGCAAGTTCCCTACTCAGCGGGCTTCCTAAAGATGTTTACTGGTCTGAATGCAAGAAGCATGATGTCCCCAATTTCACAAGAAGGAAAGCAGTGTTAGTGTTATTTGTGTAGTTGGTTATCTTAGAGCACTAAATTTAAGGACTATCGTTGGGACTTGTCATGTATATTATCTTCAGTGCCTTGTAATCTCAATTAGGA

Fln Alignment:

Contig7076___GIIACMSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMGEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVIGVFNCQGAGWCRVDKKNLVHDSQPKAITGAIRSMDVDYLPKVADENWDGDSVVYSHRGGELVCLPKGAALPITLKAREYEVFTVVPLKGLANGISFAPIGLIKMFNSGGAISAYEFDPNTSTVYLKVRGCGDFGAYCSVRPQAVYVDSTQIGFSYEEECGLTTFTLKVPETELYLWDIRIDI
D5AEI9_________________GIISCMSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVLGVFNCQGAGWCRVDKKNLIHDSQPKTISGAIRSMDVDYLPEIADENWDGDSIVYSHRGGELVCLPKSAALPITLKAREYEVFTIVPLKWLSNDISFAPIGLIKMFNSGGAISAYWFYQNTSTVYLKVRGCGDFGAYCSVMPEAVYVDSTETEFSYQEECRLISFTLRVPETELYLWDIRIKI

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
300			75	25	0.996473
301	75		25		0.996473
437	16			83	0.994512
438		83		16	0.994512
440			83	16	0.994512
502	25			75	0.996473
504	25	75			0.996473
505		75		25	0.996473
506	80			20	0.995493
509		75	25		0.996473
510		75		25	0.996473
753	11			88	0.923564
757		88		11	0.923564
774	22		66		0.999999
776	11		88		0.923564
777		77		22	0.999999
832	16		66		0.988813
833		16	83		0.994512
878	14		85		0.993533
911		16	83		0.994512
913	83			16	0.994512
916	20			80	0.995493
917		20	80		0.995493
918	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain