SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7008

Length: 465 nt

UniGene Fasta

>biog3_v1.0_unigene7008
CAGATGAAATTCAGGATGAAGATCCCAATGTTGCTCGCATTTTGTGTGAGCATGCATATCTTTGGCACAAAATCTGGACCCTAATAGTGAAGGAAGAGGTGTGCTGCAATTCAAGGAAGGTTGATGTCAGTCATCAGGCAAAAGCTTGCGAAGAAGGATGGAGGAGAAATTGATCGAAGCCAAGATATTGTTCTCATTCAAGAGTTCTACAAGCGGTATAGGGAAAAACATAGAGTGGATGAACTTCAGGAGGAGGAGATGAAATTACAGGAATCAGGGGACATTCAGTGGTGACCTTCAAGAGTTGGAGCGAAGAACTCTGAAAATGAAAAGAGTCTATGCAACTTTAAAGGTTCTAGGGGAGGTAGTGGAGGCTCTTACAAGGGAAGTAGCTCCTGAAGGTGCAGATAATTTGATTCCTGAAGAGTTCAAAAAAGTAATGGAATCAGATGCAGCGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene7008

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25728	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Beta 1,3 glucan synthase n=2 Tax=Pooideae RepID=Q6WGM8_LOLMU	-	-	69%
FL-Next	sp=Callose synthase 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	89%
Blast2go	callose synthase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	callose deposition in cell wall	GO:0052543	Biological Process	79%
Blast2go	microsporogenesis	GO:0009556	Biological Process	79%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	79%
Blast2go	generative cell mitosis	GO:0055047	Biological Process	79%
Blast2go	pollen germination	GO:0009846	Biological Process	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SFU6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1724 aas, your sequence is shorter than subject: 57 - 1931

Fln protein: DEIQDEDPNVARILCEHAYLWHKIWTLIVKEEVCCNSRKVDVSHQAKACEEGWRRN*

Protein Length: 58

Fln nts: CAGATGAAATTCAGGATGAAGATCCCAATGTTGCTCGCATTTTGTGTGAGCATGCATATCTTTGGCACAAAATCTGGACCCTAATAGTGAAGGAAGAGGTGTGCTGCAATTCAAGGAAGGTTGATGTCAGTCATCAGGCAAAAGCTTGCGAAGAAGGATGGAGGAGAAATTGATCGAAGCCAAGATATTGTTCTCATTCAAGAGTTCTACAAGCGGTATAGGGAAAAACATAGAGTGGATGAACTTCAGGAGGAGGAGATGAAATTACAGGAATCAGGGGACATTCAGTGGTGACCTTCAAGAGTTGGAGCGAAGAACTCTGAAAATGAAAAGAGTCTATGCAACTTTAAAGGTTCTAGGGGAGGTAGTGGAGGCTCTTACAAGGGAAGTAGCTCCTGAAGGTGCAGATAATTTGATTCCTGAAGAGTTCAAAAAAGTAATGGAATCAGATGCAGCGAAGACATT

Fln Alignment:

Contig7008___DEIQDEDPNVARILCEHAY
Q9SFU6_________________DEIQDEDPNIARILCEHGY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
285	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain