SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6975

Length: 408 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6975
TGTTGCTGTGCCCAGTATCATTCACAGAGATATAAAGGCCAGTAATATTCTGTTAGACAATGAGTTTGAGGCTCTTATTACTGATTTTGGTCTGGCGAGGAATATAAATCCTCAAAAAGAGTCATATATCTACCCAGGTAGCTGGGACACTGGGGTACATGCCTCCAGAATATTTTAATGGATCCATTGCTACGAAGCAAGCTGATGTTTACAGCGTTGGAATGTTGATGATGGAGATTGCCACTGGAAGGAGGCCTAATCTTTGTATCAAGGAGGATAGCCACAGGAGAACTCTGCGGGGTTGGGTGTACGAACTGATGGAAGAGAAACGCCACATGGACTTAATCGATGAAGAAATTAGAGAATCATTTAAATCTGATCAGCATTCAGAGGAAGAAAAATTGGAGT

Ace file of the UniGene biog3_v1.0_unigene6975 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11682	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	phytosulfokine receptor 2 [Arabidopsis thaliana] sp\|Q9FN37.1\|PSKR2_ARATH RecName: Full=Phytosulfokine receptor 2; Short=AtPSKR2; AltName: Full=Phytosulfokine LRR receptor kinase 2; Flags: Precursor dbj\|BAB10719.1\| receptor protein kinase-like protein [Ara	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	72%
Blast2go	response to wounding	GO:0009611	Biological Process	72%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	72%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%
Blast2go	peptide receptor activity	GO:0001653	Molecular Function	72%
Blast2go	chloroplast	GO:0009507	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 98 aas, your sequence is shorter than subject: 59 - 402

Fln protein: VAVPSIIHRDIKASNILLDNEFEALITDFGLARNINPQKESYIYPGSWDTGVHASRIF*

Protein Length: 60

Fln nts: TGTTGCTGTGCCCAGTATCATTCACAGAGATATAAAGGCCAGTAATATTCTGTTAGACAATGAGTTTGAGGCTCTTATTACTGATTTTGGTCTGGCGAGGAATATAAATCCTCAAAAAGAGTCATATATCTACCCAGGTAGCTGGGACACTGGGGTACATGCCTCCAGAATATTTTAATGGATCCATTGCTACGAAGCAAGCTGATGTTTACAGCGTTGGAATGTTGATGATGGAGATTGCCACTGGAAGGAGGCCTAATCTTTGTATCAAGGAGGATAGCCACAGGAGAACTCTGCGGGGTTGGGTGTACGAACTGATGGAAGAGAAACGCCACATGGACTTAATCGATGAAGAAATTAGAGAATCATTTAAATCTGATCAGCATTCAGAGGAAGAAAAATTGGAGT

Fln Alignment:

Contig6975___VPSIIHRDIKASNILLDNEFEALITDFGLAR
A9NWR4_________________VPHIVHRDIKASNVLLDRDLNPKIADFGLAK

SNPs (tot: 4)

Position	A %	C %	T %	Probability
165	25	75		0.996473
224	83		16	0.994512
291	25		75	0.996473
293	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain