SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6958

Length: 305 nt

UniGene Fasta

>biog3_v1.0_unigene6958
CTGCAGATGAGGAAATTGTATGGAAAAGAATTGTATGGAAAGCCAGCGTTTACTTGGTCACCATTGGAATGCTAGTTGCCATGCTATGTGGCCTCAATATGTCATGGAGTGCTATTACTGCAGCCCTTGCCCTTGTTGTTCTTGATTTTACAGATGCTCGACCCTACATGGAGAAGGTTTCTTATTCCCTTCTGGTCTTTTTCTCGGGTATGTTTATCACGGTAGATGGTTTCAACGAGACCGGTATACCTAGTACACTGTGGAATGCTGTGGAGCCTCATGCACAAATAAATAATGTTCTTGGA

Ace file of the UniGene biog3_v1.0_unigene6958

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3897	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases	-	-	6.0e-16	35%
FL-Next	tr=Arsenite transport protein, putative; Ricinus communis (Castor bean).	-	-	0.0	76%
Blast2go	transmembrane expressed	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	arsenite transport	GO:0015700	Biological Process	84%
Blast2go	transmembrane transport	GO:0055085	Biological Process	84%
Blast2go	potassium ion transport	GO:0006813	Biological Process	84%
Blast2go	citrate transport	GO:0015746	Biological Process	84%
Blast2go	voltage-gated potassium channel activity	GO:0005249	Molecular Function	84%
Blast2go	arsenite transmembrane transporter activity	GO:0015105	Molecular Function	84%
Blast2go	citrate transmembrane transporter activity	GO:0015137	Molecular Function	84%
Blast2go	plastid	GO:0009536	Cellular Component	84%
Blast2go	voltage-gated potassium channel complex	GO:0008076	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Arsenical pump membrane protein, ArsB	IPR000802	-	0.0	-
Sma3	Divalent ion symporter	IPR004680	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RIV7

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 101 - 564

Fln protein: ADEEIVWKRIVWKASVYLVTIGMLVAMLCGLNMSWSAITAALALVVLDFTDARPYMEKVSYSLLVFFSGMFITVDGFNETGIPSTLWNAVEPHAQINNVLG

Protein Length: 102

Fln nts: CTGCAGATGAGGAAATTGTATGGAAAAGAATTGTATGGAAAGCCAGCGTTTACTTGGTCACCATTGGAATGCTAGTTGCCATGCTATGTGGCCTCAATATGTCATGGAGTGCTATTACTGCAGCCCTTGCCCTTGTTGTTCTTGATTTTACAGATGCTCGACCCTACATGGAGAAGGTTTCTTATTCCCTTCTGGTCTTTTTCTCGGGTATGTTTATCACGGTAGATGGTTTCAACGAGACCGGTATACCTAGTACACTGTGGAATGCTGTGGAGCCTCATGCACAAATAAATAATGTTCTTGGA

Fln Alignment:

Contig6958___WKRIVWKASVYLVTIGMLVAMLCGLNMSWSAITAALALVVLDFTDARPYMEKVSYSLLVFFSGMFITVDGFNETGIPSTLWNAVEPHAQINNVLG
B9RIV7_________________WKRMLWKSCVYLITIAMLVALLMGLNMSWSAITAALALVVLDFKDARPCLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWDFMEPHAKIDNAAG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
27	80			20	0.995493
29	80			20	0.995493
168	40	60			1.0
170	40	60			1.0
172			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain