SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6844

Length: 1810 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6844

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23500	49/62
SustainPine v2.0	sp_v2.0_unigene60955	12/62

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 6A homolog A n=26 Tax=Magnoliophyta RepID=PS6AA_ARATH	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	26s protease regulatory subunit 6a homolog a	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	96%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	96%
Blast2go	pollen development	GO:0009555	Biological Process	96%
Blast2go	proteasomal protein catabolic process	GO:0010498	Biological Process	96%
Blast2go	binding	GO:0005488	Molecular Function	96%
Blast2go	ATPase activity	GO:0016887	Molecular Function	96%
Blast2go	cytoplasm	GO:0005737	Cellular Component	96%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	96%
Blast2go	nucleus	GO:0005634	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX40

Fln msg:

Fln protein: MAMAMNEDSIFEFEGEDELSSMTTEELTRGARMLDTENRVFRDEAQRTNLDLDTTKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA*

Protein Length: 428

Fln nts: CCTGTGGTTGCTGGTTGATTGTCTGGGTTCGAATTCAGTTGTGGTCGTCGAATGTAAA_-_ATGGCCATGGCAATGAACGAAGACAGTATTTTCGAATTCGAAGGAGAGGACGAGCTTTCTTCAATGACGACAGAAGAGCTTACCAGAGGAGCTCGTATGCTAGATACTGAAAATCGGGTTTTCAGGGATGAAGCTCAGAGGACGAATCTAGACTTAGATACAACGAAAGAAAAAATAAAGGAGAACCAAGAGAAAATCAAACTGAACAAGCAACTTCCTTATTTGGTTGGAAATATCGTCGAGATCTTAGAAATGAACCCCGAGGAGGAAGCAGAAGAAGATGGCGCAAATATTGATTTGGACTCACAAAGAAAGGGAAAATGTGTAGTGTTGAAGACATCAACACGGCAAACAATCTTTTTGCCTGTGGTAGGGCTTGTAGATCCAGATAAACTGAAACCTGGAGATCTAGTGGGAGTTAATAAAGACAGCTATTTAATACTTGACACACTTCCATCGGAGTATGATTCTCGTGTGAAGGCCATGGAAGTAGATGAAAAGCCAACTGAGGATTACAATGACATAGGAGGCCTTGAAAAACAGATTACAGAATTGGTTGAGGCCATTGTCTTGCCAATGACTCACAAGGAGAGGTTCCAGAAACTTGGTATTCGCCCACCGAAAGGGGTCCTACTTTATGGGCCTCCAGGAACTGGAAAAACACTCATGGCTCGTGCATGTGCTGCACAAACAAATGCAACATTTTTAAAACTTGCTGGGCCACAACTAGTCCAGATGTTCATTGGAGATGGTGCCAAGCTTGTTCGAGATGCATTTCAACTTGCAAAGGAGAAATCTCCTTGCATTATCTTTATAGATGAGGTCGATGCTATTGGAACAAAGCGTTTTGACAGTGAAGTAAGTGGGGATAGAGAAGTACAACGCACTATGCTAGAGTTACTGAATCAGCTCGATGGATTTAGCAGTGATGATCGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATATTAGATCCAGCTCTTATGCGTTCAGGCCGTCTAGACCGGAAGATAGAATTTCCTCACCCAACAGAGGATGCACGTGCGCGGATTTTACAGATTCATTCAAGAAAAATGACTGTTCATCCAGATGTCAACTTCGAAGAGCTTGCACGTTCTACTGATGATTTCAATGGTGCACAGTTGAAAGCTGTTTGTGTAGAAGCTGGTATGCTTGCGCTGCGTCGAGATGCCACTGAGGTTACCCATGAAGATTTCAATGAAGGAATAATTCAAGTTCAAGCTAAAAAGAAGTCCAGCTTGAACTACTATGCGTAA___ACCTGCTTTTCGTTGGATCAGAATTTGCTGCTCAGAGTTCTTTCTCGTGATGAATAAATGCATATTTTAACTCTCCAGTTTTCCCGACTAGTATTTGCTATTCATTTATGTAACCTTAGAAGGTAGGAAAAGGACATGCACTTCTTGTAAATAGAATGGCTCAGAAAAGGTAAAACTAAGGCAAAGTTGATTTCTCATTGCCATTGATACTAGATTTCACAATGCAACGCATGGGCTTTATCTCTGGTTCAAGAGTGAATTCGCTGTTGCAAATATCTGGGCAGTCCTTAGTGTGGCTTTTGGTGGATGTCCGAGTACTTGAGTACTTGTTAGAATGTAGTAGGCTATGCATTTTTCTTTTCTCTTCCATTTTAAAAAGCCTAATGCCCTCATAAAATCTTACATGAATATGTAGCAGGAGGAATGGTTATAAGCAAAAGCAAGGCCTTTAACGTGTAAAAAGAAAACATT

Fln Alignment:

Contig6844___MAMAMNEDSIFEFEGEDELSSMTTEELTRGARMLDTENRVFRDEAQRTNLDLDTTXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA
A9NX40_________________MATAMTEDSIFE--GEDELSSMTTEELTRGARMLESENRVLRDEAQRTNLELDTTKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKDKSPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1404	20	80			0.995493
1406	20			80	0.995493
1407		20	20		0.99255
1408	80			20	0.995493
1483			75	25	0.996473
1532	25			75	0.996473
1533		25		75	0.996473
1561			25	75	1.0
1568		12		87	0.992554
1569	12		87		0.992554
1570		87		12	0.992554
1571	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain