SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6826

Length: 644 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6826 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3939	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana] ref\|NP_973621.1\| mitochondrial import inner membrane translocase subunit Tim17 [Arabidopsis thaliana] sp\|Q9SP35.2\|TIM17_ARATH RecName: Full=Mitochondrial import inner mem	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	mitochondrial import inner membrane translocase subunit tim17	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	71%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	71%
Blast2go	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	71%
Blast2go	integral to membrane	GO:0016021	Cellular Component	71%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
155	14			85	0.993533
156	14	85			0.993533
158			14	85	0.993533
397	33	66			0.997452
398	33	66			0.997452
399		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain