SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6799

Length: 894 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6799 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1080	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] gb\|AAK53040.1\|AF375456_1 AT5g65380/MNA5_11 [Arabidopsis thaliana] dbj\|BAB11560.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN28899.1\| At5g65380/MNA5_11 [Arabidopsis thaliana] gb\|AED980	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	multidrug resistance	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	65%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	65%
Blast2go	membrane	GO:0016020	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Allinase, C-terminal	IPR006948	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8J3

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 298 - 490

Fln protein: LLIPSISVFLIGMANALETLCAQAFGAKKDSMLGIYLQRSWIVISGLAALLFPIFMFAAPIFRFLGHPENIADLSGTAARWCIPLYLALPFSCTMGGYLSSQSKNMIVAGSAAFGTVTTVLLNWILVLNSNMGLWGALVSLNIGSWVSTIFSFLYVIRGGCPFTWTGFSIEAFDELWPFLKLSVASGALSCLDFLYYRILVLMAGQVKDTEIMLDSLSICLAILSLMMCIPLGLLVATGVRVANQLGAGIPTGAKFSAVVSLAYSFIIGIIMFAVILVFRSHLGYLFTSNTSVQHADI

Protein Length: 299

Fln nts: CTTCTTATTCCTTCGATTTCCGTATTCTTGATTGGAATGGCAAATGCACTTGAGACTCTATGTGCGCAGGCTTTTGGCGCTAAGAAAGACAGCATGCTTGGAATATATCTGCAGCGCTCTTGGATTGTAATATCTGGACTTGCAGCGCTTCTTTTTCCCATATTTATGTTTGCCGCCCCTATTTTCAGGTTTCTAGGGCATCCTGAAAATATCGCTGACTTATCAGGGACAGCAGCGCGGTGGTGCATTCCACTCTATCTTGCATTGCCTTTCAGTTGTACGATGGGGGGATATTTAAGTTCGCAATCAAAGAATATGATCGTCGCAGGGTCAGCTGCATTTGGAACAGTAACCACGGTTCTGTTAAATTGGATATTGGTCTTGAATTCTAATATGGGCCTCTGGGGTGCGCTTGTTTCATTAAACATTGGGTCTTGGGTGTCTACGATTTTCAGTTTCCTCTATGTTATCCGTGGCGGGTGTCCCTTTACATGGACTGGATTTTCCATTGAAGCTTTTGACGAACTCTGGCCATTTTTAAAGCTTTCTGTGGCATCTGGTGCTCTGTCATGTTTGGACTTTTTATATTACAGGATTTTGGTTTTGATGGCCGGACAAGTAAAAGACACTGAAATTATGCTTGATTCACTCTCTATTTGCCTGGCCATCCTTTCACTGATGATGTGTATACCTCTTGGCCTTCTGGTTGCGACCGGTGTGAGGGTTGCAAACCAGCTCGGAGCTGGGATTCCCACAGGGGCTAAATTTTCCGCCGTTGTCTCATTGGCATATTCGTTCATTATAGGAATTATAATGTTTGCTGTTATTTTGGTTTTCCGTAGCCATCTGGGTTATTTATTTACCAGTAATACTTCTGTGCAACATGCTGACATT

Fln Alignment:

Contig6799___LLIPSISVFLIGMANALETLCAQAFGAKKDSMLGIYLQRSWIVISGLAALLFPIFMFAAPIFRFLGHPENIADLSGTAARWCIPLYLALPFSCTMGGYLSSQSKNMIVAGSAAFGTVTTVLLNWILVLNSNMGLWGALVSLNIGSWVSTIFSFLYVIRGGCPFTWTGFSIEAFDELWPFLKLSVASGALSCLDFLYYRILVLMAGQVKDTEIMLDSLSICLAILSLMMCIPLGLLVATGVRVANQLGAGIPTGAKFSAVVSLAYSFIIGIIMFAVILVFRSHLGYLFTSNTSVQHA
D5A8J3_________________LIVGFDSGILIGMGNALGTLCGQAFGANKHHMLGIYLQRSWLVLMGFAVLLLPLFLFTTPILRFLGQSKDVAQLSGRVALWCIPFHFSFPFYFAIQRYLISQRKNIIIAWSAAVGTIVSVLLNWLFVLKWNMGIDGALASLDIGWWIPAIIQFLYVTCGGCPLTWTGFSREAFYELWPFIKLSFASGVMLCLEIWYYRILVLMTGQIKNTEVIVNSLTICLNINDWELSIPLGFLVATSVRVANQLGARNPRGAKFSILVSTVYSSLVGIMILVLLLVFRGHLGYLFTNSTAVQEA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
448	66	33			0.997452
450	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain