SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6771

Length: 977 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6771

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15407	19/32
SustainPine v2.0	sp_v2.0_unigene15459	12/32
SustainPine v2.0	sp_v2.0_unigene76882	1/32

Source	Descriptions	Term	Type	Identity
AutoFact	Phytocyanin homolog n=9 Tax=Pinus RepID=Q9LLZ7_PINTA	-	-	66%
FL-Next	tr=Putative phytocyanin; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	phytocyanin	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Cupredoxin	IPR008972	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
142	14	85			0.993533
143	85			14	0.993533
156	14			71	0.984337
211	50	50			1.0
219		50		50	1.0
258			85	14	0.993533
259		85	14		0.993533
319	12			87	0.992554
321		87	12		0.992554
322			87	12	0.992554
342	12			87	0.992554
343		12		87	0.992554
346		87		12	0.992554
357			88	11	0.923564
360			88	11	0.923564
396	85	14			0.993533
399	85			14	0.993533
639		12	87		0.992554
641			87	12	0.992554
642		87		12	0.992554
643	14		85		0.993533
644		85		14	0.993533
645		85		14	0.993533
653	16	83			0.994512
655	16		83		0.994512
656			83	16	0.994512
697	20		80		0.995493
702		80		20	0.995493
728	16			83	0.994512
729		83		16	0.994512
789	75	25			0.996473
795		33		66	0.997452
798			66	33	0.997452
888	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
19	33	CTGCT CTGCT CTGCT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain