SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6677

Length: 348 nt

UniGene Fasta

>biog3_v1.0_unigene6677
CAAGCAGCAGCGAGGAGGTCGGGCTGTGCGATGACGATGAGATCAGCGGAGGCCTTCATTCGAAAAAGAGGAGGCTGAGCGTCCAGCAGGTGAGGTCGCTGGAGACGAGTTTTGAAACCGAGAGCAAACTCGAACCGGAGCGGAAGATGCAGCTCGCAGCGGAATTAGGTCTCCAACCGAGACAGGTAGCGGTGTGGTTCCAGAACCGTCGGGCGCGCTGGAAGACGAAGCAGCTCGAACGGGACTACGATGATCTCAAGCAGCAGTACGAGGAAGTTGTCGCGGAGAAAAAGAAGCTCGAAGGACAGGTGGCAAGATTGACGCAAGAGGTCGTGGCCGCTAAAGGTG

Ace file of the UniGene biog3_v1.0_unigene6677

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene960	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-binding protein (Fragment) n=1 Tax=Catharanthus roseus RepID=A1DR78_CATRO	-	-	2.0e-30	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	hdzip i protein	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	69%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	69%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	69%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYL7

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 115 - 274

Fln protein: SSSEEVGLCDDDEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKKKLEGQVARLTQEVVAAKG

Protein Length: 116

Fln nts: CAAGCAGCAGCGAGGAGGTCGGGCTGTGCGATGACGATGAGATCAGCGGAGGCCTTCATTCGAAAAAGAGGAGGCTGAGCGTCCAGCAGGTGAGGTCGCTGGAGACGAGTTTTGAAACCGAGAGCAAACTCGAACCGGAGCGGAAGATGCAGCTCGCAGCGGAATTAGGTCTCCAACCGAGACAGGTAGCGGTGTGGTTCCAGAACCGTCGGGCGCGCTGGAAGACGAAGCAGCTCGAACGGGACTACGATGATCTCAAGCAGCAGTACGAGGAAGTTGTCGCGGAGAAAAAGAAGCTCGAAGGACAGGTGGCAAGATTGACGCAAGAGGTCGTGGCCGCTAAAGGTG

Fln Alignment:

Contig6677___SSSEEVGLCDDDEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKKKLEGQVARLTQEVVAAKG
A9NYL7_________________SSSDEVGLCDDEEISGGLHSKKRRLSVQQVRSLETSFETESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKKKLEGQVARLTQEVVAAKG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
57	25	75			0.996473
141	20		80		0.995493
142		80		20	0.995493
171	20			80	0.995493
174		80		20	0.995493
281	25			75	0.996473
283	25		75		0.996473
284		75		25	0.996473
285			75	25	0.996473
313	33		66		0.997452
316	66			33	0.997452
317			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain