SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6560

Length: 540 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6560
CATTTGTGGGAAGTTGGGCTCCTCTGACAAGTCAGCAGGAGCAGAGGTATTCAAATGCATTTCTGCAACATGTGGACGCTTCTACCATCCCCAGTGCGTATCAAAGATTATTGCTTCGGAAGATGAGGCGGAAGACCTTGAGAAAAAAATTGCTAATGGACAGCAATTTACATGCCCTATTCATAAATGTTTTGTTTGCAAGCATACAGAAAACAAGGAAGATGAAAATCTGCAATTTGCCATTTGTCGACGCTGTCCGAGAGCATATCATAGAAAATGTTTGCCAAAATCCATTCTCTTTGATGACACTGATGATGAGCCACAGCGGGCTTGGGATGATCTCATCCCAAACAGGATATTAATATACTGCAGAAAACATAAAATTGACCCAGATTTAGCAACACCAAAAAGGAATCACATAGTATTCCCAGAGACATCTTCTACTGAAAAGAGTGTTAAAAGAAATCATGTAATTTCACCTGAGTCTAATGCGGCAAAAGCCATTGGAAAAAGGGTTAGAGAGTCCCCTGAACCTAAGAA

Ace file of the UniGene biog3_v1.0_unigene6560 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27268	2/8
SustainPine v2.0	sp_v2.0_unigene28285	6/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNMT1-RFD multi-domain protein	-	-	4.0e-18	23%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Blast2go	enhanced downy mildew 2	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	60%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	60%
Blast2go	signal transduction	GO:0007165	Biological Process	60%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	60%
Blast2go	nucleus	GO:0005634	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Membrane bound O-acyl transferase, MBOAT	IPR004299	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BHD4

Fln msg: Distance to subject end: 1123 aas, your sequence is shorter than subject: 179 - 2238

Fln protein: ICGKLGSSDKSAGAEVFKCISATCGRFYHPQCVSKIIASEDEAEDLEKKIANGQQFTCPIHKCFVCKHTENKEDENLQFAICRRCPRAYHRKCLPKSILFDDTDDEPQRAWDDLIPNRILIYCRKHKIDPDLATPKRNHIVFPETSSTEKSVKRNHVISPESNAAKAIGKRVRESPEPK

Protein Length: 180

Fln nts: CATTTGTGGGAAGTTGGGCTCCTCTGACAAGTCAGCAGGAGCAGAGGTATTCAAATGCATTTCTGCAACATGTGGACGCTTCTACCATCCCCAGTGCGTATCAAAGATTATTGCTTCGGAAGATGAGGCGGAAGACCTTGAGAAAAAAATTGCTAATGGACAGCAATTTACATGCCCTATTCATAAATGTTTTGTTTGCAAGCATACAGAAAACAAGGAAGATGAAAATCTGCAATTTGCCATTTGTCGACGCTGTCCGAGAGCATATCATAGAAAATGTTTGCCAAAATCCATTCTCTTTGATGACACTGATGATGAGCCACAGCGGGCTTGGGATGATCTCATCCCAAACAGGATATTAATATACTGCAGAAAACATAAAATTGACCCAGATTTAGCAACACCAAAAAGGAATCACATAGTATTCCCAGAGACATCTTCTACTGAAAAGAGTGTTAAAAGAAATCATGTAATTTCACCTGAGTCTAATGCGGCAAAAGCCATTGGAAAAAGGGTTAGAGAGTCCCCTGAACCTAAGAA

Fln Alignment:

Contig6560___CGKLGSSDKSAGAEVFKCISATCGRFYHPQCVSKIIASEDEA--EDLEKKIANGQQFTCPIHKCFVCKHTENKEDENLQFAICRRCPRAYHRKCLPKSILFDDTDDEP--QRAWDDLIPNRILIYCRKHKIDPDLATPKRNHIVFPETSSTEKSVKRNHVISPESNAAKAIGKR
A5BHD4_________________CGKLGSSDKSSGAEVFLCANATCGRFYHPQCVAKLLHREDEAAAEDLQKNIYAGELFACPIHRCHVCKQGEDKKDLELQFAICRRCPKSYHRKCLPRKISFEDLDEEGIIQRAWDGLLPNRILIYCLKHEIDELLGTPIRDHIKFP-NDEEKMEKRRSELFSSRKDLDKVVSKK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
137	25		75		0.996473
138	25		75		0.996473
190	40		60		1.0
235	16		83		0.994512
240		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain