SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6530

Length: 978 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6530 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene878	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp\|Q9LYT3.1\|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb\|CAB86931.1\| putative protein [Arabidopsis thaliana] emb\|C	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	transparent testa 12	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of seed dormancy	GO:0010231	Biological Process	75%
Blast2go	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	75%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	75%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	75%
Blast2go	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	75%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADQ8

Fln msg: Overlapping hits, possible frame ERROR between 121 and 94, your sequence is shorter than subject: 316 - 517

Fln protein: QAQNIVAPLAYLSVGTFLLHILLTWLAVDKxxxxxxxxxxxTELFWWILVIATALYIFYSPSCRHTWTGFTLKAFTGLWSFFKLTVASAFMLTLEIWYFQGLVLISGLLPDAEVELDSISVCMNYLNWDMQLMLGLSAAASIRVGNELGAMRPKAARFSVVVVVSTCILISVVLSIGVMALRRELSIAFTTSTEVIEAVSALTPLLAISVFLNGVQPVLSGVAIGCGWQAVVAYVNLVTYYLVGLPVGIALGLKTSLGIDGIWWGLILGVALQTLVLIILTARTNWNKEVQSASERVERSQYGEPADNSNGVAIP*

Protein Length: 317

Fln nts: GCAGGCTCAGAACATAGTTGCCCCTCTTGCATATTTGTCTGTAGGGACATTTCTGCTCCACATTCTCTTGACATGGCTGGCAGTAGACAAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTGAGCTTTTCTGGTGGATTCTCGTCATTGCCACTGCGTTGTATATTTTCTACAGCCCTTCCTGCAGACACACTTGGACTGGCTTTACTTTGAAGGCCTTCACGGGACTCTGGTCTTTCTTCAAGTTAACTGTGGCTTCAGCTTTTATGCTAACTTTAGAAATATGGTACTTTCAAGGGCTAGTGCTGATATCGGGATTGCTTCCTGATGCAGAAGTTGAATTGGATTCTATTTCTGTTTGCATGAACTACTTGAACTGGGACATGCAACTGATGTTGGGACTCAGTGCAGCTGCAAGTATAAGAGTTGGTAACGAGCTTGGAGCAATGCGTCCCAAAGCTGCAAGGTTTTCTGTGGTAGTTGTGGTGTCCACCTGCATATTGATAAGTGTCGTCCTTTCCATCGGAGTTATGGCTCTCAGAAGAGAACTCAGCATAGCCTTTACAACCAGCACTGAGGTGATAGAAGCAGTGTCTGCACTGACACCATTACTTGCAATATCTGTATTCTTAAATGGCGTTCAACCTGTTCTTTCAGGGGTGGCAATTGGATGTGGATGGCAAGCTGTGGTGGCATATGTGAATTTAGTGACATACTATCTTGTTGGCTTACCAGTTGGAATTGCTTTAGGATTGAAGACCAGTCTTGGAATCGATGGAATCTGGTGGGGATTAATCCTGGGAGTGGCACTGCAGACGTTAGTACTCATTATTCTTACAGCACGTACTAATTGGAACAAAGAGGTCCAATCGGCGTCGGAGAGAGTTGAGCGTTCCCAGTACGGGGAGCCTGCAGATAACTCAAACGGAGTGGCGATTCCATAAGTACATTATTGAAATTAAGAGTGAATCGCA

Fln Alignment:

Contig6530___QAQNIVAPLAYLSVGTFLLHILLTWLAVDKLxxxxxxxxxDTELFWWILVIATALYIFYSPSCRHTWTGFTLKAFTGLWSFFKLTVASAFMLTLEIWYFQGLVLISGLLPDAEVELDSISVCMNYLNWDMQLMLGLSAAASIRVGNELGAMRPKAARFSVVVVVSTCILISVVLSIGVMALRRELSIAFTTSTEVIEAVSALTPLLAISVFLNGVQPVLSGVAIGCGWQAVVAYVNLVTYYLVGLPVGIALGLKTSXXXXXXXXXXXXGVALQTLVLIILTARTNWNKEVQSASERV
D5ADQ8_________________QAQSIVAPSAYISFCTIFVHVFLTWLAVYKLxxxxxxxxxVLSLSWWIVVIAQFIYILKSPRCKYTWTGFSLQAFHGLPSFLKLSAASAVMLCLETWYFQILVLLAGLLDNPEIALDSLSICMSVLGWLFMISVGFNAAASVRVSNELGAGNPRAASFSVKIVTLMSFIISVIFGIVIILLRNVMSYAFTEGTEVADAVAELSPFLAFSIILNGVQPVLSGVAVGCGWQALVAYINVGCYYVIGIPLGCLLGFKFDFGVKGIWSGMLGGTCLQTIILLIITYRTNWNKEVEKASHRL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
109			83	16	0.994512
112		83		16	0.994512
201	14			85	0.993533
202		85		14	0.993533
204	85			14	0.993533
244	16		83		0.994512
245		16		83	0.994512
247	83			16	0.994512
248			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain