SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6525

Length: 482 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6525
AATGTTACTAGGTGTGAGGAAAAAGGATTGTCGATTTTTAATTGAATGTCGCAAGTATATAAGCCCAGAGGGACAGCAATTTGCTTCATGTCGTGAGGTTTCTGCATATATGCTTTCAAGCAGTATGCATTGCCCTGGTGTTGGACTTGTTCAAGAGCCATCTAGCAACTCAACAAGCCCAGTCAACGACAGTGGAGAATGCTTTAAACAACAGACTACCCATTTGAATGACATTGCCTTACTTAATAATGAACAGCAGCAAACATCTTCAACTATGACAGTGGGTAAGGTTGAAGATAATTCAAGAAAGGATAATTGCATTACTGCTTCAAATACATCAGACTTCAGTAACAGAAGTAATTTCGTGGCACATTTGACTGATCAGCACACCCAGAAGGTGAAGAAAACAAGCACTTCTAAGTCAATTGTGGATGGTGTAATTATAAGAAATGGTAAATATGAATGTCAAATATGCCATAAAG

Ace file of the UniGene biog3_v1.0_unigene6525 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7054	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	methyl-CPG-binding domain 8 [Arabidopsis thaliana] gb\|AAL86338.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91660.1\| unknown protein [Arabidopsis thaliana] gb\|AEE30228.1\| methyl-CPG-binding domain 8 [Arabidopsis thaliana]	-	-	2.0e-21	35%
FL-Next	Isoform 2 of Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8	-	-	0.0	34%
Blast2go	methyl binding domain protein	-	-	8.40779e-45	50%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	8.40779e-45	50%
Blast2go	nucleus	GO:0005634	Cellular Component	8.40779e-45	50%

Source	InterPros	Term	Type	e value	Identity
Sma3	AT hook, DNA-binding motif	IPR017956	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LME6-2

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 160 - 425

Fln protein: MLLGVRKKDCRFLIECRKYISPEGQQFASCREVSAYMLSSSMHCPGVGLVQEPSSNSTSPVNDSGECFKQQTTHLNDIALLNNEQQQTSSTMTVGKVEDNSRKDNCITASNTSDFSNRSNFVAHLTDQHTQKVKKTSTSKSIVDGVIIRNGKYECQICHK

Protein Length: 161

Fln nts: AATGTTACTAGGTGTGAGGAAAAAGGATTGTCGATTTTTAATTGAATGTCGCAAGTATATAAGCCCAGAGGGACAGCAATTTGCTTCATGTCGTGAGGTTTCTGCATATATGCTTTCAAGCAGTATGCATTGCCCTGGTGTTGGACTTGTTCAAGAGCCATCTAGCAACTCAACAAGCCCAGTCAACGACAGTGGAGAATGCTTTAAACAACAGACTACCCATTTGAATGACATTGCCTTACTTAATAATGAACAGCAGCAAACATCTTCAACTATGACAGTGGGTAAGGTTGAAGATAATTCAAGAAAGGATAATTGCATTACTGCTTCAAATACATCAGACTTCAGTAACAGAAGTAATTTCGTGGCACATTTGACTGATCAGCACACCCAGAAGGTGAAGAAAACAAGCACTTCTAAGTCAATTGTGGATGGTGTAATTATAAGAAATGGTAAATATGAATGTCAAATATGCCATAAAG

Fln Alignment:

Contig6525___MLLGVRKKDCRFLIECRKYISPEGQQFASCREVSAYMLSSSMHCPGVGLVQEPSSNSTSPVNDSGECFKQQTTHLNDIALLNNEQQQTSSTM
Q9LME6-2_______________LMLYIKRKGSNLLLACRRYISPDGQQFETCKEVSTYLRS---------LLESPSKNQHYYLQSDNKTLGQQPVIANE-SLLGNSDSMDSETM

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
46	25	75			0.996473
47	75			25	0.996473
48		75	25		0.996473
49		75		25	0.996473
259	85	14			0.993533
262			85	14	0.993533
303			33	33	0.997753
305	33		66		0.997452
306		33	66		0.997452
307	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain