SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6514

Length: 406 nt

UniGene Fasta

>biog3_v1.0_unigene6514
CTGGTGACAGATGATAATGGGGTGAACCGGATGGTTACAAGGAGCCTTCTTGCTCGTTTAGGGTGTGATGTGACAGTGGTGGACTCTGGTCATGAGTGCTTGCAAGCAATGTCACAGGCTGGGCAGAATTTCAAGGTATTATTTCTTGATGTATGCATGCCGGGTATGGATGGTTATGAAGTGGCCATTCACATTCAGGAGATGTTTCCTAGTCGGCATGAAAGACCATTACTTGTGGCTCTTACCGGAAGTACTGACAAAGCAACCAAGGAAAAGTGCATAAAGGTTGGAATGGATGGCGTGTTATTGAAACCAGTGTCTCTTGAAAAAATGCGTAGTGTACTAGTTGATCTCTTGGAACATGGGTCAGTATGTGACAGTATACAGAGGCTATGACCGTGTCATT

Ace file of the UniGene biog3_v1.0_unigene6514

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene680	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Ethylene receptor ETR1 n=2 Tax=core eudicotyledons RepID=B3FIA9_ACTDE	-	-	73%
FL-Next	tr=Response regulator 1; Pinus pinea (Italian stone pine).	-	-	26%
Blast2go	ethylene receptor	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	86%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	86%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	86%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	86%
Blast2go	metal ion binding	GO:0046872	Molecular Function	86%
Blast2go	receptor activity	GO:0004872	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0LLL0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 25 aas, your sequence is shorter than subject: 132 - 184

Fln protein: LVTDDNGVNRMVTRSLLARLGCDVTVVDSGHECLQAMSQAGQNFKVLFLDVCMPGMDGYEVAIHIQEMFPSRHERPLLVALTGSTDKATKEKCIKVGMDGVLLKPVSLEKMRSVLVDLLEHGSVCDSIQRL*

Protein Length: 133

Fln nts: CTGGTGACAGATGATAATGGGGTGAACCGGATGGTTACAAGGAGCCTTCTTGCTCGTTTAGGGTGTGATGTGACAGTGGTGGACTCTGGTCATGAGTGCTTGCAAGCAATGTCACAGGCTGGGCAGAATTTCAAGGTATTATTTCTTGATGTATGCATGCCGGGTATGGATGGTTATGAAGTGGCCATTCACATTCAGGAGATGTTTCCTAGTCGGCATGAAAGACCATTACTTGTGGCTCTTACCGGAAGTACTGACAAAGCAACCAAGGAAAAGTGCATAAAGGTTGGAATGGATGGCGTGTTATTGAAACCAGTGTCTCTTGAAAAAATGCGTAGTGTACTAGTTGATCTCTTGGAACATGGGTCAGTATGTGACAGTATACAGAGGCTATGACCGTGTCATT

Fln Alignment:

Contig6514___LVTDDNGVNRMVTRSLLARLGCDVTVVDSGHECLQAMSQAGQN---------FKVLFLDVCMPGMDGYEVAIHIQEMFPSRHERPLLVALTGSTDKATK-EKCIKVGMDGVLLKPVSLEKMRSVLVDLLEHGSVCD
C0LLL0_________________LVVDDSVLDRKLIEKLLKISSYRVTAVDRVRKALQFLGLEDDEDDLNVDNIQVNMIITDYCMPGMTGYDLLRRVKE---SSAVKDIPVVIMSSENVESRISRCMSEGAEEFLLKPVQLSDVKKLRSHILNKGGSRD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
391		20	80		0.995493
392	20		80		0.995493
393		80		20	0.995493
404	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain