SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6448

Length: 1397 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6448 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8184	49/76
SustainPine v2.0	sp_v2.0_unigene17429	3/76
SustainPine v2.0	sp_v2.0_unigene60316	22/76

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamyl alcohol dehydrogenase n=4 Tax=Rosaceae RepID=Q2Z1Z0_PRUMU	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cinnamyl alcohol dehydrogenase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alcohol dehydrogenase.	EC:1.1.1.1	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	86%
Blast2go	Fatty acid metabolism	00071	86%
Blast2go	Glycine, serine and threonine metabolism	00260	86%
Blast2go	Tyrosine metabolism	00350	86%
Blast2go	Chloroalkane and chloroalkene degradation	00625	86%
Blast2go	Naphthalene degradation	00626	86%
Blast2go	Retinol metabolism	00830	86%
Blast2go	Metabolism of xenobiotics by cytochrome P450	00980	86%
Blast2go	Drug metabolism - cytochrome P450	00982	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	86%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	86%
Blast2go	alcohol dehydrogenase (NAD) activity	GO:0004022	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPJ3

Fln msg:

Fln protein: MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHVLEGAKERLQLVKANLLEEGTFDAAVDGCEGVFHTASPFYTSVKDPQAELLDPAVKGTINVLNACAKASSVKRVIVTSSVAAVIFNSRPRSPGVVDESWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDVVTINPAMVIGTLLQPTLNTSCAAILQLMNGSSTYPNATFGWVSVKDVAKAHILAFEVPSANGRYLLVERIAHFSEIVKILSKLYPGCALPTKCADDNPFVPTYTVSKEKIEKLGLNYTPIEEALRDTVESLKEKKLLNLDSNL*

Protein Length: 327

Fln nts: CAGAGTTCTAGTAGCGGATTTGGTTCCAACTTTTATTCTCGTCATTAATCGTTCTCATTGTAGCCTACCTTTTTGTAAAACCTTCGTAACACACTTTGGTCTGATTATCCTATTCTCCGAAAACGCTTCGATCCTTGCTGTGATATCCAATTTCGATAACC_-_ATGAGCGGGAGACTAGTCTGCGTTACAGGAGCCTCGGGATTCATCGCGTCGTGGTTGGTGAAGTTGCTGCTGGATCGCGGTTATGTAGTTCGAGCTACCGTTCGTGATTTAGGTAATCCTGAGAAGACAAAGCACTTACATGTATTGGAAGGAGCAAAGGAAAGGCTTCAACTGGTGAAAGCAAATTTACTTGAGGAGGGAACATTTGATGCAGCTGTGGATGGCTGTGAAGGTGTCTTTCATACTGCATCACCATTTTACACTAGCGTCAAAGATCCCCAGGCTGAATTGCTTGATCCAGCAGTCAAGGGGACTATTAATGTTCTTAATGCATGTGCCAAAGCTTCTTCTGTGAAGAGGGTGATAGTGACCTCCTCTGTAGCAGCTGTTATATTCAATTCTAGGCCTCGATCACCTGGAGTAGTTGATGAAAGTTGGTTCAGTGACGCAGAGTACTGCAAGCAAACTAAGGCCTGGTATCAGCTATCAAAGACATTGGCAGAAGAAACTGCATGGAAATTTGCAAAGGAGAAGGGTATCGATGTTGTCACGATAAATCCAGCGATGGTGATTGGCACACTTTTACAGCCTACTCTGAATACAAGCTGTGCTGCAATTCTACAACTAATGAATGGGTCTTCAACATATCCTAATGCGACGTTTGGATGGGTCAGTGTAAAGGATGTAGCAAAGGCACATATTCTAGCATTTGAAGTTCCATCGGCAAATGGAAGATATCTTTTGGTTGAGAGGATTGCCCACTTCTCAGAAATTGTGAAGATCCTGAGCAAACTATATCCAGGATGCGCACTTCCAACAAAGTGTGCAGATGATAATCCCTTTGTCCCTACCTATACTGTCTCAAAAGAAAAGATAGAGAAGTTGGGTCTAAACTACACTCCTATTGAAGAGGCTCTCAGAGATACCGTTGAAAGCTTGAAGGAAAAGAAGTTGCTCAACTTAGATAGCAATCTGTGA___TTTGTCAATACCTGGAAACCTTTGTGTTTTTAAATATATGTCATTGGGCATGCATCTAGCTGTTATTTTGTTGAAAATGAGCTACATCTTCTGTCAAGCACAGCAATGTCCTTGCAAGTCAAACATGTCCTTTACCTATTTTATTTTTGGATCATTTTTGAAAACATTTAGGATGAACGTAACTTCATTATTCTTAGCTGTTATAATTATTGGGCAACTGTTGAAGTATATCAATATAGATGTAGTGTGTAGAGATAC

Fln Alignment:

Contig6448___MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHVLEGAKERLQLVKANLLEEGTFDAAVDGCEGVFHTASPFYTSVKDPQAELLDPAVKGTINVLNACAKASSVKRVIVTSSVAAVIFNSRPRSPGVVDESWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDVVTINPAMVIGTLLQPTLNTSCAAILQLMNGSSTYPNATFGWVSVKDVAKAHILAFEVPSANGRYLLVERIAHFSEIVKILSKLYPGCALPTKCADDNPFVPTYTVSKEKIEKLGLNYTPIEEALRDTVESLKEKKLLNLDSNL
A9NPJ3_________________MSGRLVCVTGASGFIASWLVKLLLDRGYVVRATVRDLGNPEKTKHLHALEGANERLQLVKANLLDEGTFDAAVDGCEGVFHTASPFYIGIKDPQAEMLDPAVKGTINVLNACAKASSVKRVVVTSSVASVIFNSRPRSPGVVDETWFSDAEYCKQTKAWYQLSKTLAEETAWKFAKEKGIDIVTINPAMVIGTLLQPSLNTSCAAILQLMNGSSTYPNMTFGWVSVKDVAEAHILAFEVPSANGRYLLVEKVAHCSEIVKILSKLYPGCTLPTKCADDNPFVPTYTVSKERIEKLGLKYTPIEEALRDTVESLKEKKLLNLDSNV

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
129	83			16	0.994512
185	20			80	0.995493
189	80			20	0.995493
190		80		20	0.995493
192	25		75		0.996473
242		16	83		0.994512
330	23	76			1.0
331	15			84	0.999986
333		76	15	7	0.999983
334	84			15	0.999986
643	11	88			0.923564
645		11	88		0.923564
648		11		88	0.923564
649	88			11	0.923564
654	11		88		0.923564
655		11		88	0.923564
657	88		11		0.923564
764	20	80			0.999996
766			80	20	0.999996
768	10	70		20	0.999998
777	11		88		0.923564
797	12	87			0.992554
800	87			12	0.992554
813		88	11		0.923564
902	10		90		0.90298
905		90		10	0.90298
906	90			10	0.90298
967	11			88	0.923564
989	14		85		0.993533
993		85		14	0.993533
1011		85		14	0.993533
1012	85		14		0.993533
1014	85			14	0.993533
1019	85			14	0.993533
1083	20			80	0.995493
1319	33	33	33		0.997753
1320	33		66		0.997452
1321			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain