SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6445

Length: 541 nt

UniGene Fasta

>biog3_v1.0_unigene6445
AATGTACCTAAAGAGGCCAATCAGCAGCATTAACAGCGGCAGTAATACGAACAATAACAACAACAATAATAATAGTGGTACAGGTTCGGCCATGAAGAAGCCCAAGGGACAGTCTGTTCTTTATTCATTCGATAAGAACGGTGTCCAGCATTTTGTCTCTTCGGAGGACGCAATGTTGGTGGATCTCAAGAACGAAGGATCCTCGGCCTCCGCAACGGCCGCCAATTTGTCAAGAAAGAAGGCCACACCCCCGCAGCCCGTCAAGAAATTGGTCATCAAACCCTTTAAAGAGAAGCCAAAGATACCCCCAAATTTTGAAGAGGTTACGTGGGAAAAACTTAAAGAAGCTGTTAATGCCATTCATATGAAGCAACCAGTATCCTGCAGCCTGGAGGAACTTTATCAGGCTGTAGAGGACCTTTGTTTGCACAAAATGGCAGGCAACCTTTACAGTCGGCTTCAGCAAGAATGCGAGGCACATATTGCTGACACATTACAGTCTTTAGTTGGGCAGAGTCCTGATCCTGTAGTATTTCTGTCA

Ace file of the UniGene biog3_v1.0_unigene6445

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17875	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	cullin 4 [Arabidopsis thaliana]	-	-	80%
FL-Next	sp=Cullin-4; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	ubiquitin-protein cullin 4	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	89%
Blast2go	negative regulation of photomorphogenesis	GO:0010100	Biological Process	89%
Blast2go	protein polyubiquitination	GO:0000209	Biological Process	89%
Blast2go	flower development	GO:0009908	Biological Process	89%
Blast2go	hormone-mediated signaling pathway	GO:0009755	Biological Process	89%
Blast2go	leaf development	GO:0048366	Biological Process	89%
Blast2go	cotyledon development	GO:0048825	Biological Process	89%
Blast2go	short-day photoperiodism, flowering	GO:0048575	Biological Process	89%
Blast2go	sugar mediated signaling pathway	GO:0010182	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8LGH4

Fln msg: Distance to subject end: 626 aas, your sequence is shorter than subject: 180 - 792

Fln protein: MYLKRPISSINSGSNTNNNNNNNNSGTGSAMKKPKGQSVLYSFDKNGVQHFVSSEDAMLVDLKNEGSSASATAANLSRKKATPPQPVKKLVIKPFKEKPKIPPNFEEVTWEKLKEAVNAIHMKQPVSCSLEELYQAVEDLCLHKMAGNLYSRLQQECEAHIADTLQSLVGQSPDPVVFLS

Protein Length: 181

Fln nts: A_-_ATGTACCTAAAGAGGCCAATCAGCAGCATTAACAGCGGCAGTAATACGAACAATAACAACAACAATAATAATAGTGGTACAGGTTCGGCCATGAAGAAGCCCAAGGGACAGTCTGTTCTTTATTCATTCGATAAGAACGGTGTCCAGCATTTTGTCTCTTCGGAGGACGCAATGTTGGTGGATCTCAAGAACGAAGGATCCTCGGCCTCCGCAACGGCCGCCAATTTGTCAAGAAAGAAGGCCACACCCCCGCAGCCCGTCAAGAAATTGGTCATCAAACCCTTTAAAGAGAAGCCAAAGATACCCCCAAATTTTGAAGAGGTTACGTGGGAAAAACTTAAAGAAGCTGTTAATGCCATTCATATGAAGCAACCAGTATCCTGCAGCCTGGAGGAACTTTATCAGGCTGTAGAGGACCTTTGTTTGCACAAAATGGCAGGCAACCTTTACAGTCGGCTTCAGCAAGAATGCGAGGCACATATTGCTGACACATTACAGTCTTTAGTTGGGCAGAGTCCTGATCCTGTAGTATTTCTGTCA

Fln Alignment:

Contig6445___AANLSRKKATPPQPVKKLVXXXXXXXXXXXXXXXXVTWEKLKEAVNAIHMKQPVSCSLEELYQAVEDLCLHKMAGNLYSRLQQECEAHIADTLQSLVGQSPDPVVFLS
Q8LGH4_________________AANLSRKKATLPQPTKKFVIKLNKAKPTLPTNFEENTWEKLQSAIRAIFLKKKISFDLESLYQAVDNLCLHKLDGKLYDQIEKECEEHISAALQSLVGQNTDLTVFLS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
120	16			83	0.994512
122	16	83			0.994512
124			16	66	0.988813
364	33			66	0.997452
366		66	33		0.997452
367	66			33	0.997452
425	33			66	0.997452
426		33		66	0.997452
427	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain