SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6442

Length: 485 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6442
TGCAAGTTGAGGGGGTTTCACAAGGACCTTTGTTGGACATAGCATCACGAAGAATGGGGACCTTTAATGAGCAATTCATCATGGAACCAGGAGAGCAGATTGGATGTTATTATATATATAAGCAGGAGCTGTCCATCCAACAGTGAAAAAAATGCATACAACCAAATTGTCTTTTTGCTTCCGTACAGTCTATATTCTCTGGTACAGGAGCGCTGTAAAAATAGCAGCCCAAGAACAGGAAGTTTGTGAAGGGAGTTTCCATCATTGCAGTTGTAGCAGGGGTTGGAAGATTCCTTGATGTTATAGCTTGTATGCATCAGGTATCACCATCAAAGAAAACCCACATCTGCCTTCAGATTGATTGACTAGGAAGTAAACAGGCATGGGAGACAACTTACTGGAAGCAGATGAACAGCTAATATTTCAGTGAAGATTTGCTCAAGAGACATTAGAGACTGATGAACTAATAACTCCAAACAGACATT

Ace file of the UniGene biog3_v1.0_unigene6442 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8351	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	mitogen-activated protein kinase kinase [Suaeda salsa]	-	-	60%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	70%
Blast2go	mitogen-activated protein kinase kinase 6-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	73%
Blast2go	MAPK cascade	GO:0000165	Biological Process	73%
Blast2go	induced systemic resistance, ethylene mediated signaling pathway	GO:0009866	Biological Process	73%
Blast2go	phosphorylation	GO:0016310	Biological Process	73%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	73%
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9T1K8

Fln msg: your sequence is shorter than subject: 48 - 515

Fln protein: QVEGVSQGPLLDIASRRMGTFNEQFIMEPGEQIGCYYIYKQELSIQQ*

Protein Length: 49

Fln nts: TGCAAGTTGAGGGGGTTTCACAAGGACCTTTGTTGGACATAGCATCACGAAGAATGGGGACCTTTAATGAGCAATTCATCATGGAACCAGGAGAGCAGATTGGATGTTATTATATATATAAGCAGGAGCTGTCCATCCAACAGTGA___AAAAAATGCATACAACCAAATTGTCTTTTTGCTTCCGTACAGTCTATATTCTCTGGTACAGGAGCGCTGTAAAAATAGCAGCCCAAGAACAGGAAGTTTGTGAAGGGAGTTTCCATCATTGCAGTTGTAGCAGGGGTTGGAAGATTCCTTGATGTTATAGCTTGTATGCATCAGGTATCACCATCAAAGAAAACCCACATCTGCCTTCAGATTGATTGACTAGGAAGTAAACAGGCATGGGAGACAACTTACTGGAAGCAGATGAACAGCTAATATTTCAGTGAAGATTTGCTCAAGAGACATTAGAGACTGATGAACTAATAACTCCAAACAGACATT

Fln Alignment:

Contig6442___QVEGVSQGPLLDIASRRMGTFNEQFIMEPGEQIGCYYIYKQELSIQQ
A9T1K8_________________QVEGVPSSPCMDVEKRRMGTFNEQFCMEPGEQMGSFYISKQELYIQQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
40	33		66		1.0
138	25	75			0.996473
356	25	75			0.996473
358			75	25	0.996473
359		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain