SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6435

Length: 1408 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6435

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4341	61/61

Source	Descriptions	Term	Type	Identity
AutoFact	Histidine-containing phosphotransfer protein n=1 Tax=Catharanthus roseus RepID=Q94KS0_CATRO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	histidine-containing phosphotransfer	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	cell growth	GO:0016049	Biological Process	83%
Blast2go	embryo sac development	GO:0009553	Biological Process	83%
Blast2go	regulation of cytokinin mediated signaling pathway	GO:0080036	Biological Process	83%
Blast2go	cell division	GO:0051301	Biological Process	83%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	83%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	83%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	IPR008207	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPP0

Fln msg: Separated hits, possible frame ERROR between 406 and 417,

Fln protein: MAVSQMQQRYINFTNSLFQEGFVDEQFTQLQQLQDESNPDFVAEVxxxxxEDSDKLLADLSKTLNQEPVDFKRVDGCVHQFKGSSSSIGARRVMNTCVTFRAFCQDKNREGCLYCLQQMKQECYLVKNKLETLFQLEKQIVEAGGTVPMAE*

Protein Length: 153

Fln nts: AATGTAAGTGGTTCAACGCAGAGTACTGTGGAATGGATTTGCGATTTTGGCGCAGAAGACAGAGGTGAGCAGGGATGTGAGAAGGGTACAAATGTCAAGCTCTCTTCTTCTATTTCGTGGCTTCAACGGATTGATCATTTATCATTAATATTACGGATCTCACGGCTATTGGCAGAAATTTCCGAGATCTCGTTCTGTATTTCTCTGAATCTTTCAGGCTCCACCTTAATTCAGCCCACACGAAGAAGAAGAGGTAGCAGAGGGAGGG_-_ATGGCAGTTTCACAGATGCAGCAGCGTTACATTAATTTCACTAATTCTCTTTTCCAGGAGGGATTCGTGGATGAACAATTCACACAACTTCAGCAGCTGCAAGATGAGAGTAATCCTGATTTTGTTGCGGAGGTTGTxxxxxxxxxxxxTGAGGATTCTGATAAACTACTGGCCGACTTGTCAAAGACTCTCAATCAGGAACCAGTTGATTTCAAGAGAGTTGATGGCTGTGTGCACCAATTCAAGGGTAGCAGCTCAAGTATAGGAGCGCGGCGAGTAATGAATACATGTGTAACGTTTCGTGCATTTTGTCAAGATAAAAATAGAGAAGGATGCTTATATTGCTTACAACAAATGAAGCAGGAGTGTTACCTCGTGAAAAACAAGCTGGAGACTTTGTTTCAGCTTGAGAAACAGATTGTAGAAGCTGGTGGAACTGTTCCTATGGCAGAGTAA___GCACTGAGACATAATATTCCATTTCTGGGACAATTAAGAACCGGAGGAAAAAGTGAGTTACAATCCTGGAGTGGCTGGGTAACGGCTAGAATTAATGCTAAAATTTCCACTTTTGTTTCTGTAAATTATAAATATGTTAGCATCTATCCTGAATAGATCAACAAAGCAAGTGCTATAGCGATGAACAGCTGGTGGTTGTGCCAGCTGGTAATGAATTCCATTTCTCTAAGTCGTGCCATATATACATGGAAGAGTGAAATTGGCATCAGTGATATGGGCCAGTAGATGAGACCTCTATTACCATGGGAGGTTGGTTGTTTTTACTCTGATGCATATATTTGCAAGGAAGGTGTTATGTAATAGCTGTCAACTTTACTAAATTGTGCTAGTTCATTTTGATCAATGCATGAGTTCAAGTCTTAGGAATTCTTAACAAAATTCATGTGGGTTGACAATTATTTTGAAGTTTATAGAAATTAGAGCTCTTAATTAAGGATTGTGTACAAAGGGAAATGGTTGGCTTTATATGGTGTCCGTATGTGTTTAGTTTGCCATGTGAAAACTGAAAACATGTCAATGAACGGCAAAACGGATTTTCAATTGCCGAAACCAATACATACGAGGCTTCTCATGCCTGATTAAGTGTGGTTTACATGTCATGAACTGATGCGTGATAGCAGAATCTC

Fln Alignment:

Contig6435___SQMQQRYINFTNSLFQEGFVDEQFTQLQQLQDESNPDFVAEVVxxxxEDSDKLLADLSKTLNQEPVDFKRVDGCVHQFKGSSSSIGARRVMNTCVTFRAFCQDKNREGCLYCLQQMKQECYLVKNKLETLFQLEKQIVEAGGTVPMAE
A9NPP0_________________SQMQQRYINFTTSLFQEGFVDEQFTQLQQLQDESNPDFVAEVVxxxxEDSEKLLGDLSKTLNQEPVDFKRVDGCVHQFKGSSSSIGARRVMNTCVTFRAFCQDKNREGCLYCLQQMKQECYLVKNKLETLFQLEKQIVEAGGTVPMAE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1223			80	20	0.995493
1302	25			75	0.996473
1305	75			25	0.996473
1313	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain