SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6398

Length: 998 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6398

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene205	9/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Spc7 multi-domain protein	-	-	2.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	protein chloroplastic-like	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Fructose-2,6-bisphosphatase	IPR003094	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	6-phosphofructo-2-kinase	IPR013079	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUN1

Fln msg: atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 286 - 314

Fln protein: KDVVQKAPEVVKFYQSLMKRDAKKDTCGTGIFDNQDVAIAHSDMIGEIKNRSAHLLAIKSDVETKGHFVRSLIREVQAAAYTDIDDVLAFVQWLDDELASLVDERAVLKHFDWPEKKADIMREAAFGYQDAKKLESEVWQYEDDLRQPCDVALKKMTVLLEKLEQSVYNLLRKRETSITVYKQFHIPTDWMLDSGMISKIKVASVKLAKKYMNRISIELESMGNPEKEPALEFLLLQGVRFAYRAHQFAGGFDEETMHAFEELRKLACIHDEEQQNLQLSGLSAQ*

Protein Length: 287

Fln nts: AATGTAAAAGTGACAGCAGTGTGTTTTCCAGCACCACCGCCGCCGCCACCACCTCCTACTCATCACGCCCTTCATCCTAAGTTCACAGTTAGAAAGATGTTGTGCAGAAAGCTCCAGAAGTAGTCAAGTTTTACCAGTCATTGATGAAACGAGATGCCAAAAAAGACACATGTGGAACTGGAATTTTTGATAATCAAGATGTAGCGATTGCTCACAGTGACATGATTGGAGAAATCAAGAATCGTTCTGCACATTTACTGGCAATCAAATCAGATGTGGAGACAAAAGGTCACTTTGTCCGATCCTTGATAAGAGAAGTGCAGGCTGCAGCATATACAGACATCGACGATGTTCTAGCTTTTGTTCAGTGGCTTGACGATGAGCTTGCTTCTCTTGTAGATGAGAGAGCAGTCCTGAAACATTTTGACTGGCCAGAGAAGAAAGCTGACATAATGCGGGAAGCTGCATTTGGATACCAGGATGCGAAAAAGCTGGAATCAGAAGTTTGGCAATATGAAGATGACCTTCGTCAGCCTTGTGATGTTGCCTTAAAGAAGATGACAGTATTATTAGAAAAGCTGGAGCAAAGTGTCTATAACCTGCTACGTAAAAGAGAAACATCAATTACCGTCTACAAACAGTTTCATATTCCAACTGATTGGATGCTTGACAGTGGCATGATAAGCAAGATAAAGGTGGCTTCTGTTAAACTAGCCAAAAAGTACATGAACCGAATATCTATCGAGCTTGAATCAATGGGAAACCCTGAGAAGGAACCTGCACTGGAGTTCTTGCTGCTTCAAGGCGTGCGTTTTGCTTATAGAGCTCATCAGTTTGCAGGAGGATTTGATGAAGAAACAATGCATGCTTTTGAGGAATTGAGAAAACTAGCCTGCATCCATGATGAAGAGCAACAAAATTTACAGTTGTCTGGTTTATCAGCTCAGTAG___CCTTCCAAAGCAAACACCTATGATTCTTGAAAGATAATGATGTACATT

Fln Alignment:

Contig6398___VQKAPEVVKFYQSLMKRDAKKDTCGTGIFDNQDVAIAHSDMIGEIKNRSAHLLAIKSDVETKGHFVRSLIREVQAAAYTDIDDVLAFVQWLDDELASLVDERAVLKHFDWPEKKADIMREAAFGYQDAKKLESEVWQYEDDLRQPCDVALKKMTVLLEKLEQSVYNLLRKRETSITVYKQFHIPTDWMLDSGMISKIKVASVKLAKKYMNRISIELE-SMGNPEKEPALEFLLLQGVRFAYRAHQFAGGFDEETMHAFEELRKLACIHDEEQQNLQLS
A9NUN1_________________VHRAPELVEFYQSLMKREAKKEAA-TMASAASNVADVRNNMIGEIENRSAFLLSVKADVETQGDFVQALATEVRASAYKNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQDLKRLESVAASFVDNPNLSCDAALKKMYSLLEKVEQSVYALLRTRDMAIARYKEFNIPTDWLLDSGVVGKIKLASVQLARKYMKRVTSELDAALNDPDKEPIKEFLLLQGVRFAFRVHQFAGGFDAESMNAFEDLRNR--VHGQAEETDKMS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
307	20			80	0.995493
493		66		33	1.0
510	20		80		0.995493
513	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain