SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6352

Length: 1778 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6352

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17456	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	nbs-lrr resistance protein	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ3

Fln msg: Overlapping hits, possible frame ERROR between 739 and 739, your sequence is shorter than subject: 529 - 813

Fln protein: FEAEGYKTIITTRQDYTIPILDSTRVYNIPMLQQADALSLFCFWAFGRASIPRTEDEDLVKMVEAECKGLPLALKVIGSSLRGEPQLVWENANKKLRRAESISQYHRDNLLHCLETSVDVLDEESKQCFLDLGAFPKGRKFSVDSLLDIWVYVRGMEWEDAFVVLLELASRNLLNITSDPGSRAISFGCASELSFSQHDVMRDLALRLANHDNTIHCKRLFMPSKEDSIPTKWLTLKDQTSQAQFxxIHTGQMEEQNWCQINFPEVEALALFFAASQYCLPTFLHTMPKLKVVLIYNYGSKRATLHRLPNFPSFTHLKSVLVERLIVSSPFEYCRFSGNLEKLSVCLCEGLGNMTLLDKEQVPRFPMFREIIFDHCSDLEELPGKICNLTCLQKLSVTNCHLVQKLPDDLGRLRSLTVLRLSACPSLSMLPPSISELQQLEFLDISLCRSLKDFPMQFDQLSNLKMLDMRECSGLKKLPKALANLKSLRRVICDESTGRQWLAIRASTMPNLTVEVVEERFSLDWLDE*

Protein Length: 530

Fln nts: GTTTGAAGCTGAGGGATATAAAACAATTATTACAACAAGGCAAGATTATACTATTCCGATTTTAGACAGTACCCGTGTGTATAACATACCCATGTTACAGCAAGCTGATGCCCTGTCACTTTTCTGCTTCTGGGCCTTTGGACGGGCCTCGATTCCAAGAACAGAAGATGAAGATCTTGTTAAAATGGTTGAAGCGGAGTGCAAGGGTTTACCACTTGCCCTCAAGGTTATTGGCAGTTCTTTACGCGGTGAGCCACAGCTTGTTTGGGAAAACGCCAACAAAAAACTTCGAAGGGCAGAATCTATATCACAATATCATAGAGATAACCTTCTTCATTGTTTGGAAACAAGTGTAGATGTTCTTGATGAGGAGTCAAAGCAGTGTTTTCTGGACTTGGGGGCATTTCCCAAAGGTAGAAAGTTCAGCGTAGATTCATTATTGGATATTTGGGTATATGTCCGCGGAATGGAATGGGAAGATGCTTTTGTGGTTTTGTTAGAACTTGCAAGTCGTAATCTCCTAAATATCACAAGCGATCCAGGGAGTAGGGCCATCTCATTTGGCTGTGCCTCTGAGCTCTCTTTTTCTCAACATGATGTAATGCGAGATTTAGCCCTGCGTCTGGCAAATCATGATAATACCATCCATTGTAAGAGGCTTTTCATGCCTAGTAAGGAAGATAGTATTCCGACAAAATGGCTAACACTCAAAGATCAGACATCTCAGGCTCAATTTxxxxxxATCCATACAGGTCAAATGGAAGAGCAAAATTGGTGTCAAATAAATTTTCCTGAAGTGGAAGCTTTGGCTTTGTTCTTTGCTGCAAGTCAATACTGTCTCCCAACCTTTTTACATACCATGCCAAAATTGAAGGTTGTTCTAATATACAATTACGGTTCTAAGCGTGCAACACTTCATAGGCTGCCAAACTTTCCTTCATTTACACATCTTAAATCTGTGCTAGTTGAGAGGTTGATTGTGTCTTCTCCTTTCGAGTACTGTAGATTCTCTGGGAACCTGGAAAAGTTGTCTGTATGCCTATGTGAGGGATTGGGGAATATGACTCTATTGGACAAAGAACAAGTCCCAAGGTTTCCAATGTTTCGAGAAATTATTTTTGATCACTGTAGTGATTTGGAGGAACTGCCAGGAAAAATATGCAATTTGACATGCCTCCAGAAATTGTCTGTCACTAATTGCCATCTTGTCCAAAAGTTACCTGATGACTTAGGGAGGTTAAGGTCACTTACGGTGCTGAGATTGTCTGCATGCCCGAGCTTGTCAATGCTCCCTCCTTCCATTTCCGAACTTCAGCAACTCGAATTTCTTGATATTTCACTGTGCAGGTCTTTGAAGGACTTTCCCATGCAGTTTGATCAGTTGTCAAATTTGAAGATGCTGGACATGAGGGAGTGCTCTGGACTGAAAAAGCTGCCTAAAGCATTGGCCAATCTAAAATCTTTAAGACGTGTAATCTGTGATGAGAGCACCGGACGACAGTGGCTGGCTATCAGAGCCTCTACCATGCCTAATCTTACAGTTGAGGTCGTCGAAGAACGCTTTAGTTTGGACTGGCTTGATGAATGAAAAGCCCCGAATCTCAACAACTTTTATTTATTCTATGTTGGTGAATTGTGTAAAATTTGAACAGCACTGAGGATTGTGCTTGCATGTCGCATGTTCTTAGAATTTGATTTTCTTGTAAATACCCCAGGGGATGTGCTATGTTTTCTCAATCAATATGTTATACATCACTGCATATTTTCCCAGAAATGAAT

Fln Alignment:

Contig6352___FEAEGYKTIITTRQDYTIPILDSTRVYNIPMLQQADALSLFCFWAFGRASIPRTEDEDLVKMVEAECKGLPLALKVIGSSLRGEPQLVWENANKKLRRAESISQYHRDNLLHCLETSVDVLDEESKQCFLDLGAFPKGRKFSVDSLLDIWVYVRGMEWEDAFVVLLELASRNLLNITSDPGSRAIS-FGCASELSFSQHDVMRDLALRLANHDNTIHCKRLFMPSKEDSIPTKWLTLKDQTSQAQFVSIHTGQMEEQNWCQINFPEVEALALFFAASQYCLPTFLHTMPKLKVVLIYNYGSKRATLHRLPNFPSFTHLKSVLVERLIVSSPFEYCRFSGNLEKLSVCLCEGLGNMTL--LDKEQVPRFPMFREIIFDHCSDLEELPGKICNLTCLQKLSVTNCHLVQKLPDDLGRLRSLTVLRLSACPSLSMLPPSISELQQLEFLDISLCRSLKDFPMQFDQLSNLKMLDMRECSGXXXXXXXXXXXXXXRRVICDESTGRQWLAIRASTMPNLTVEVVEERFSLDWLD
B8LKQ3_________________FEAKGYKTIYTTRENFAIPITDGRRQYEMPMLNNEDSLKLFCFWAFDQHSIPTNEYEDLVQQVAAGCNGLPLALTVIGSCLRDQPWPVWKSAKEKLSRAESISSYHREKVLERLETSIDVLRDDSRQCFLDLGAFPKGRKFSVDALLDIWVYVRGMEWNDAFAVFLELAKGNLLNLTSDRGSQAISGYSCASHISFFQHDVMRDLAFNLAIQDSTNYCSRLFMSRKEDNIPTEWISLKEQTSKAQFVSIHTGQME-QEWGQIHFPEVETLALFFEASQYRLPTFLRTMPKLKVVIIYNYSSKRAKLHGLPSFSLFTQIKSVVLERLDVSALYGYCRSSESLEKFSLCLCEGFGNTPLPSLEKFSVIQFPKFIEINFDHCSDLEQLPEKICNLTSLQRLSVTNCHLIQKLPDDLGKLRSLRMLRLSACLNLSMLPASICELHQLECLDISLCGSLKNFPNEFHRLSKLKMLDMRECSGLKKLPEALTKLRSLTRVTCDEHTERQWLSIKASAMPNLIIVVVKECFNLDWLE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
962	12			87	0.992554
963	12		87		0.992554
965	12		87		0.992554
1092	33	66			0.997452
1096	66			33	0.997452
1097			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain