SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6302

Length: 576 nt

UniGene Fasta

>biog3_v1.0_unigene6302
GGAGATCCCAGAGCTTAAGGACGAGCTCAATTCTCAGTACAAGGATAAGAAAAAAGATGCAGTGAAGAAGGTAATAGCTGCAATGACAGTTGGAAAAGATGTTTCATCACTGTTCACGGATGTCGTGAATTGCATGCAAACAGACAATTTGGAGCTGAAGAAGCTTGTCTATCTATATCTTATTAACTACGCTAAAAGTCAACCTGACCTTGCCATACTTGCAGTGAATACTTTTGTCAAGGATTCCCAAGATCCAAATCCTTTGATTCGTGCTCTAGCTGTACGAACAATGGGTTGTATTCGGGTTGACAAAATCACAGAGTATTTGTGTGATCCGCTTCAAAGATGCCTCAAGGATGATGATCCTTACGTGCGAAAGACGGCTGCTATATGTGTTGCTAAACTTTATGATATTAATGCTGAACTGGTGGAGGATAGAGGGTTTCTAGAGACTCTTAAGGACTTGATTTCCGACAGCAATCCCATGGTTGTAGCGAATGCCGTGGCAGCACTGGCAGAGATCCAAGAAAACAGTAGTAGAGACAATATTTGAAATTACTAGTCACACACTACATT

Ace file of the UniGene biog3_v1.0_unigene6302

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4147	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	beta-adaptin-like protein B [Arabidopsis thaliana] sp\|Q9SUS3.1\|APBLB_ARATH RecName: Full=Beta-adaptin-like protein B; Short=At-bB-Ad; Short=At-betaB-Ad; AltName: Full=AP complex subunit beta-B; AltName: Full=Adaptor protein complex AP subunit beta-B; AltN	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	beta-adaptin-like protein c-like	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	90%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	90%
Blast2go	clathrin binding	GO:0030276	Molecular Function	90%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Adaptor protein complex, beta subunit	IPR016342	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Beta2-adaptin/TBP, C-terminal domain	IPR012295	-	-
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	IPR008152	-	-
Sma3	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	IPR013037	-	-
Sma3	Beta-adaptin appendage, C-terminal subdomain	IPR015151	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNI5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 696 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 184 - 903

Fln protein: EIPELKDELNSQYKDKKKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSRDNI*

Protein Length: 185

Fln nts: GGAGATCCCAGAGCTTAAGGACGAGCTCAATTCTCAGTACAAGGATAAGAAAAAAGATGCAGTGAAGAAGGTAATAGCTGCAATGACAGTTGGAAAAGATGTTTCATCACTGTTCACGGATGTCGTGAATTGCATGCAAACAGACAATTTGGAGCTGAAGAAGCTTGTCTATCTATATCTTATTAACTACGCTAAAAGTCAACCTGACCTTGCCATACTTGCAGTGAATACTTTTGTCAAGGATTCCCAAGATCCAAATCCTTTGATTCGTGCTCTAGCTGTACGAACAATGGGTTGTATTCGGGTTGACAAAATCACAGAGTATTTGTGTGATCCGCTTCAAAGATGCCTCAAGGATGATGATCCTTACGTGCGAAAGACGGCTGCTATATGTGTTGCTAAACTTTATGATATTAATGCTGAACTGGTGGAGGATAGAGGGTTTCTAGAGACTCTTAAGGACTTGATTTCCGACAGCAATCCCATGGTTGTAGCGAATGCCGTGGCAGCACTGGCAGAGATCCAAGAAAACAGTAGTAGAGACAATATTTGAAATTACTAGTCACACACTACATT

Fln Alignment:

Contig6302___EIPELKDELNSQYXXXXXXXXXXXXXXMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSR
B8LNI5_________________EIPELKDELNSQYKDKKKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
243			80	20	0.995493
328	20			80	0.995493
329		20	80		0.995493
330	20			80	0.995493
331			80	20	0.995493
490	25			75	0.996473
491		25		75	0.996473
492	25		75		0.996473
494	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain