SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6255

Length: 1830 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6255 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15367	97/98

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein arginine N-methyltransferase 4.2 [Arabidopsis thaliana] sp\|Q9MAT5.1\|ANM42_ARATH RecName: Full=Probable protein arginine N-methyltransferase 4.2 gb\|AAF40450.1\|AC004809_8 Similar to protein arginine N-methyltransferase from Rattus norvegicu	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein arginine n-methyltransferase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Myelin basic protein]-arginine N-methyltransferase.	EC:2.1.1.126	-	0.0	80%
Blast2go	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	GO:0019919	Biological Process	80%
Blast2go	histone arginine methylation	GO:0034969	Biological Process	80%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	80%
Blast2go	protein-arginine omega-N asymmetric methyltransferase activity	GO:0035242	Molecular Function	80%
Blast2go	[myelin basic protein]-arginine N-methyltransferase activity	GO:0016277	Molecular Function	80%
Blast2go	histone-arginine N-methyltransferase activity	GO:0008469	Molecular Function	80%
Blast2go	protein-arginine omega-N monomethyltransferase activity	GO:0035241	Molecular Function	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWP3

Fln msg:

Fln protein: MSQTANGFEEQQQRTLPAARAGGAAVVDKAADFANYFCTYAYLYHQKEMLSDRVRMDAYYTAIFENKHHFEGKTVLDVGTGSGILAIWCAQAGARKVYAVEATKMSEHARQLVIGNGVGHIVDIIEGSMEDVMLPEKVDVIISEWMGYFLLRESMFDSVICARDRFLKPTGIMYPSHARMWLAPIRSGQGEQKLLDYENAMADWNNFIEDTNDFYGVDMSVLTEPYSGEQKKYYLQTSLWNNLHPHQVIGTPFIVKEMDCLTATLDEIASVHSNFTTPIIIEQGRFSGFAGWFDVHFRGSPSSPANEVELTTAPSIDNSTHWGQQVFLLHPPMRVMRDDVLEGTFSMTRSKENHRLMDVQFIYKSKLSSGEATDPVTKFFCIE*

Protein Length: 385

Fln nts: TCCGCGATTGCAATGTGTTGGACGCCGAAATGATCTAGGTCACCGTTCCATACCTCTCTTATTTTTCGCTGTCTTCGGCCTGACAGGTTGCTTTTCCTCAGGGACTGAGACTCGGAACTAGGATGCTACACGGAGACCCAGTTCTACACACGAATTGATACAGCGGTTCTCTTCTCTACCCTGGGTCACAGAGGTTTTCTAGATTCAAGGACATATCCATCCAATCATATACCAAGATTTCATTCTGAGATTCTTGGTGTGAAGAGCTCTCGATTTTTACTTTTGCATCTGTGTTAGTCTTGAGTGGGCATAAATACAACCTCAAAGCTTATTTCATTGATTTTGTGCACA_-_ATGAGTCAGACTGCAAATGGGTTTGAAGAGCAGCAGCAGCGGACTTTGCCTGCTGCCAGAGCTGGAGGAGCCGCTGTGGTGGACAAGGCAGCAGATTTTGCTAATTACTTTTGCACTTATGCGTATCTGTATCACCAGAAAGAAATGCTCTCTGACAGAGTGAGGATGGATGCTTATTACACAGCTATCTTTGAGAACAAGCACCACTTTGAAGGCAAGACTGTTTTGGATGTAGGCACAGGAAGTGGCATTTTGGCAATTTGGTGTGCACAAGCTGGTGCAAGGAAAGTTTATGCTGTTGAAGCAACCAAAATGTCAGAACATGCACGCCAACTTGTAATCGGAAATGGTGTTGGCCACATTGTTGATATAATTGAAGGATCTATGGAGGATGTCATGTTGCCTGAAAAAGTTGATGTCATTATCTCAGAGTGGATGGGTTATTTCCTTTTGCGTGAATCCATGTTCGATTCCGTGATCTGTGCTCGGGATCGCTTTTTGAAGCCAACTGGAATCATGTATCCCAGTCATGCACGAATGTGGCTAGCACCAATCAGGTCTGGTCAGGGGGAACAAAAATTGCTAGACTATGAAAATGCTATGGCTGACTGGAATAACTTCATTGAGGATACCAATGACTTTTATGGTGTTGATATGAGCGTCCTAACAGAGCCTTACTCTGGAGAACAAAAGAAGTATTATCTACAGACATCTCTTTGGAACAATCTTCATCCACATCAAGTAATTGGCACTCCTTTTATCGTCAAAGAAATGGATTGCCTCACAGCCACTCTGGATGAAATTGCTAGTGTACATTCAAACTTTACAACTCCCATTATAATTGAACAGGGGAGATTCAGTGGATTTGCTGGATGGTTTGATGTCCATTTTCGAGGAAGTCCTTCTAGCCCAGCTAATGAGGTTGAATTGACAACAGCTCCTAGTATAGACAATTCAACGCACTGGGGTCAGCAGGTGTTTCTGTTGCATCCTCCTATGCGAGTAATGAGAGACGATGTCCTGGAAGGGACTTTTTCCATGACTCGCTCCAAGGAGAACCATCGTTTGATGGATGTCCAGTTTATTTATAAATCAAAGCTATCATCCGGAGAGGCTACTGATCCTGTCACAAAATTTTTCTGCATAGAGTAG___ATGGAGGCATTCTTTTCTGGAGGCACTGATACATTTGCAAAGATGGTAAAAATCCTGCTTAGATAGATTGGATATACTAATCTATCAGCTCTGAATTACTAGAAAATTATAAGAGCTCATATATATCTCCATTGTAGGGTCTTCAGTATATTGAGAAAATTGACCAGTTTCAGCTAGCCCGTTCTGTTAAAATTGTTATTGTCAGACTGGAAGTCTTTCAGTCTGAAATTATTTTCACAAGGAATGCGTCAATATCGTGTTGCAATTTTGACAAATTGTGTTTTTATTTCCCTATCGATTTTTCAACAAGGGGCATATGATTACATT

Fln Alignment:

Contig6255___MSQTANGFEEQQQRTLPXXXXXXXXXXXXXXXXANYFCTYAYLYHQKEMLSDRVRMDAYYTAIFENKHHFEGKTVLDVGTGSGILAIWCAQAGARKVYAVEATKMSEHARQLVIGNGVGHIVDIIEGSMEDVMLPEKVDVIISEWMGYFLLRESMFDSVICARDRFLKPTGIMYPSHARMWLAPIRSGQGEQKLLDYENAMADWNNFIEDTNDFYGVDMSVLTEPYSGEQKKYYLQTSLWNNLHPHQVIGTPFIVKEMDCLTATLDEIASVHSNFTTPIIIEQGRFSGFAGWFDVHFRGSPSSPA-NEVELTTAPSIDNSTHWGQQVFLLHPPMRVMRDDVLEGTFSMTRSKENHRLMDVQFIYKSKLSSGEATDPVTKFFCIE
A9NWP3_________________MSETANGFEEQQQRALPAARAGGAAVVDKAADFANYFCTYAYLYHQKEMLSDRVRMDAYYTAIFENKHHFEGKTVLDVGTGSGILAIWCAQAGARKVYAVEATKMSEHARQLVIGNGVSHIVDVIEGSMEDVMLPEKVDVIISEWMGYFLLRESMFDSVICARDRFLKPTGIMYPSHARMWLAPIRSGQGEQKLLDYENAMADWNNFIEDTNDFYGVDMSVLTQPYSGEQKKYYLQTSLWNNLHPHQLIGTPFIVKEMDCLTATLDEIAIVHANFTASITIEQGRFSGFAGWFDVHFRGSPSSPASHEVELTTAPSIDNSTHWGQQVFLLHPPMRVMREDVLEGTFAMTRSKENHRLMDVQFVYKSKLSSGETTDPVTKYFCIE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1640		66		33	0.997452
1641		66	33		0.997452
1740	85	14			0.993533
1742	85			14	0.993533
1743			85	14	0.993533
1778	20		80		0.995493
1780			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1440	1451	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain