SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6186

Length: 1355 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6186

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2465	32/32

Source	Descriptions	Term	Type	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein n=6 Tax=Arabidopsis RepID=F4I5A3_ARATH	-	-	62%
FL-Next	tr=P-loop containing nucleoside triphosphate hydrolase-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	75%
Blast2go	ATPase activity	GO:0016887	Molecular Function	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B3H7I9

Fln msg: Distance to subject end: 356 aas, your sequence is shorter than subject: 451 - 827

Fln protein: NVATGRSQTFQKWTSPCSSVNYQEIMELELNNRLLDGKSCSVTFEEFPYSLSEQTKALLTSGAFVYLKEEQFSKYTRNLSPASRAILLLGHAEPYHQMLAKALAHYFDAKLLLLDATDFCLKLQSKHGGGTDSQDLKSFSEAALERIGSLFESFTLPTGAEQRNCKSAGSLWRSNSGIEPKLTSSEGTSNLQSCRSNSASEPDFSRYGSSVMNTTNQASLKRANSWSFDDKLLARSLYKVLVSVSKTSPVILYLRDIERLVFRGPKTYQMFFNMIKQLSGPILILGSRILGSQEKPCYGDTEKKLSDLFPYTIDTKPPEDNTEHGAWKSKLEEDMKAIEFQDNRNHVSEILAANDVECDDLGSISFGDTILLSNYIEEIVVSAISHHLMNTEQPDYRGGRLIISSKSLAHGLSIFQAGQIDSKDTLQMESNGENPQDPTSGKIEAKMESPS

Protein Length: 452

Fln nts: AATGTCGCCACAGGCCGTTCGCAGACCTTTCAGAAATGGACGTCTCCCTGTTCTTCTGTCAATTACCAGGAAATAATGGAACTCGAGCTCAACAATCGCCTCCTTGACGGGAAATCTTGTAGTGTTACCTTCGAAGAATTCCCTTATTCCCTCAGTGAGCAGACGAAGGCTTTGTTGACGAGCGGGGCTTTTGTTTATTTGAAAGAAGAGCAGTTTTCTAAGTACACTCGAAATCTCTCGCCTGCGAGTCGAGCCATTTTGCTCTTGGGCCATGCAGAGCCCTACCACCAAATGCTTGCCAAGGCATTGGCACATTACTTTGATGCTAAATTGCTTTTGCTGGATGCTACTGACTTTTGCTTGAAGTTGCAAAGCAAACATGGAGGAGGCACTGATTCTCAGGATTTAAAGTCCTTTTCTGAAGCTGCATTAGAGCGCATTGGTAGCCTGTTTGAATCCTTCACCCTGCCTACAGGTGCAGAGCAAAGAAATTGCAAATCAGCAGGCAGTCTTTGGCGATCAAACAGTGGCATTGAACCAAAGCTGACGTCCTCTGAAGGAACAAGTAACCTTCAAAGTTGTAGGAGTAACTCGGCATCAGAACCTGATTTCTCCAGATATGGGTCATCTGTGATGAACACCACAAATCAAGCTTCATTAAAACGTGCAAATTCTTGGTCATTTGACGACAAATTACTTGCGCGATCGCTTTATAAGGTCTTGGTTTCTGTCTCAAAGACTAGTCCTGTGATTTTGTATTTGCGGGATATTGAGAGACTTGTATTCAGAGGGCCAAAGACCTATCAAATGTTTTTTAATATGATAAAACAACTCTCTGGGCCCATTTTAATACTAGGTTCCAGAATCTTGGGCTCACAAGAGAAGCCATGCTATGGAGATACTGAGAAAAAGTTGTCAGATTTATTTCCCTATACCATTGACACAAAACCCCCAGAGGATAATACAGAACATGGGGCCTGGAAGAGCAAGCTTGAAGAGGACATGAAAGCAATCGAGTTTCAAGACAACAGGAACCATGTATCAGAGATACTTGCAGCAAATGATGTTGAATGTGATGATTTGGGAAGCATTTCTTTTGGTGATACAATCCTTCTTAGTAATTATATTGAGGAAATTGTGGTCTCTGCGATTTCTCATCACCTCATGAACACAGAGCAGCCCGATTATCGTGGTGGACGTCTTATTATCTCTTCCAAAAGCTTGGCACATGGATTGAGCATATTCCAAGCAGGACAGATTGATAGCAAGGACACACTCCAAATGGAATCCAATGGAGAAAACCCACAGGATCCAACAAGTGGAAAGATTGAAGCAAAAATGGAGTCTCCTTCTAC

Fln Alignment:

Contig6186___QTFQKWTSPCSSVNYQ---EIMELELNNRLLDGKSCSVTFEEFPYSLSEQTKALLTSGAFVYLKEEQFSKYTRNLSPASRAILLLGHAEPYHQMLAKALAHYFDAKLLLLDATDFCLKLQSKHGGG-TDSQDLK-SFSEAALERIGSLFESFTLPTGAEQRNCKSAGSLWRSNSGIEPKLTSSEGTSNLQSCRSNSASEPDFSRYGSSVMNTTNQASLKRANSWSFDDKLLARSLYKVLVSVSKTSPVILYLRDIERLVFRGPKTYQMFFNMIKQLSGPILILGSRILGSQEKPCYGDTEKKLSDLFPYTIDTKPPEDNTEHGAWKSKLEEDMKAIEFQDNRNHVSEILAANDVECDDLGSISFGDTILLSNYIEEIVVSAISHHLMNTEQPDYRGGRLIISSKSLAHGLSIFQAGQIDSKDTLQMESNGENPQD--PTSGKIEAKMES
B3H7I9_________________QAVGKWAGGNSSSNNAVTADKMEKEILRQVVDGRESKITFDEFPYYLSEQTRVLLTSAAYVHLKHFDASKYTRNLSPASRAILLSGPAELYQQMLAKALAHFFDAKLLLLDVNDFALKIQSKYGSGNTESSSFKRSPSESALEQLSGLFSSFSILPQREES--KAGGTLRRQSSGVDIKSSSMEGSSNPPKLRRNSSAAANISNLASS----SNQAPLKRSSSWSFDEKLLVQSLYKVLAYVSKANPIVLYLRDVENFLFRSQRTYNLFQKLLQKLSGPVLILGSRIVDLSSEDAQ-EIDEKLSAVFPYNIDIRPPEDETHLVSWKSQLERDMNMIQTQDNRNHIMEVLSENDLICDDLESISFEDTKVLSNYIEEIVVSALSYHLMNNKDPEYRNGKLVISSISLSHGFSLFREGKAGGREKLKQKTKEESSKEVKAESIKPETKTES

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
703		80		20	0.995493
812	33		66		0.997452
813		33		66	0.997452
814	33			66	0.997452
872	20		80		0.995493
873	20		80		0.995493
874			80	20	0.995493
875		80	20		0.995493
978	25		75		0.996473
980	25	75			0.996473
982			75	25	0.996473
1019	25		75		0.996473
1021			25	75	0.996473
1161	25	75			0.996473
1163		75		25	0.996473
1164		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain