SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6084

Length: 554 nt

UniGene Fasta

>biog3_v1.0_unigene6084
TAGATGCAATCCTACATCTCATCATCGTGTTGGGTCCAAGTACAAAGTTTATCCAACGTATGACTTTGCATGCCCATATGTTGATAGTATTGAGGGTGTGACACATGCTCTTCGTTCAAGTGAATACCATGATCGCAATGAACAGTACTATCAAGTCTTAGAGGATATGGGTTTGCGCAAGGTCCATGTATGGGATTTTAGTCGTTTAAATTTGTTTACACACTTTTGAGCAAGCGAAAGTTACAATGGTTTGTAGATAACGGTAAAGTAGAGGGTTGGGATGATCCTCGGTTCCCAACAGTGCAAGGAATAATACGAAGAGGCTTGACTGCGGAGGCCTTGAAGCAGTTTATTCTCTCTCAAGGAGCATCGAAAAATCTCAACCTTATAAAGGAGTGGGACAAGCTTTGGACAATAAATAAGAAAATTATTGATCCTATATGTCCAAGACACAGTGCAGTTTTTCAAGAAGGTCGTGTGCTTTTGTGCTTAACAAATGGGCCTGAAGAACCTTTTGTTAGAATTGCACCCCGACATAAAAAGTATGAAGGAGC

Ace file of the UniGene biog3_v1.0_unigene6084

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1165	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamyl-tRNA synthetase, cytoplasmic, putative n=1 Tax=Ricinus communis RepID=B9RFS6_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	glutamyl-trna synthetase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamine--tRNA ligase.	EC:6.1.1.18	-	0.0	80%

Source	KEGGs	Term	Type	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		80%
Blast2go	Metabolic pathways	01100		80%
Blast2go	Glutamate--tRNA ligase.	EC:6.1.1.17	-	80%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	80%
Blast2go	Aminoacyl-tRNA biosynthesis	00970	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	glutamyl-tRNA aminoacylation	GO:0006424	Biological Process	80%
Blast2go	glutamine-tRNA ligase activity	GO:0004819	Molecular Function	80%
Blast2go	glutamate-tRNA ligase activity	GO:0004818	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glutamyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic	IPR004526	-	-
Sma3	Glutamyl/glutaminyl-tRNA synthetase, class Ib	IPR000924	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU5

Fln msg: Overlapping hits, possible frame ERROR between 211 and 157, Distance to subject end: 169 aas, your sequence is shorter than subject: 184 - 728

Fln protein: RCNPTSHHRVGSKYKVYPTYDFACPYVDSIEGVTHALRSSEYHDRNEQYYQxxxxxxxxxxxxxxxxxxxxVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIIRRGLTAEALKQFILSQGASKNLNLIKEWDKLWTINKKIIDPICPRHSAVFQEGRVLLCLTNGPEEPFVRIAPRHKKYEG

Protein Length: 185

Fln nts: TAGATGCAATCCTACATCTCATCATCGTGTTGGGTCCAAGTACAAAGTTTATCCAACGTATGACTTTGCATGCCCATATGTTGATAGTATTGAGGGTGTGACACATGCTCTTCGTTCAAGTGAATACCATGATCGCAATGAACAGTACTATCAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTTACACACTTTTGAGCAAGCGAAAGTTACAATGGTTTGTAGATAACGGTAAAGTAGAGGGTTGGGATGATCCTCGGTTCCCAACAGTGCAAGGAATAATACGAAGAGGCTTGACTGCGGAGGCCTTGAAGCAGTTTATTCTCTCTCAAGGAGCATCGAAAAATCTCAACCTTATAAAGGAGTGGGACAAGCTTTGGACAATAAATAAGAAAATTATTGATCCTATATGTCCAAGACACAGTGCAGTTTTTCAAGAAGGTCGTGTGCTTTTGTGCTTAACAAATGGGCCTGAAGAACCTTTTGTTAGAATTGCACCCCGACATAAAAAGTATGAAGGAGC

Fln Alignment:

Contig6084___RCNPTSHHRVGSKYKVYPTYDFACPYVDSIEGVTHALRSSEYHDRNEQYYQVxxxxxxxxxxxxxxxxxxFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIIRRGLTAEALKQFILSQGASKNLNLIKEWDKLWTINKKIIDPICPRHSAVFQEGRVLLCLTNGPEEPFVRIAPRHKKYE
B8LRU5_________________RCNPISHHRVGSKYKVYPTYDFACPYVDSIEGVTHALRSSEYHDRNEQYYRVxxxxxxxxxxxxxxxxxxFVYTLLSKRKLQWFVDNSKVEGWDDPRFPTVQGIIRRGLTVEALKQFILSQGASKNLNLM-EWDKLWTMNKKIIDPICPRHTAVLQEGRVLLCLTNGPEEPFVRIAPRHKKYE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
59	33			66	0.997452
370	20		80		0.995493
373		80		20	0.995493
399	14		85		0.993533
422	71		28		1.0
461		40	60		1.0
465	60			40	1.0
483		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain