SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6061

Length: 2658 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6061
AATGTTCATCAAGGAGCTTTCTCCTTCTGCCAATGAGGTTATTATTGTGACAAGTTCATTAATGAAAGACATGAATAGCAAGACAGATATGTATCGGGCCAATGCAATACGAGTTTTATGCAGGATCACAGATGGGGCCTTGTTGGGTCAGATTGAAAGATATCTTAAACAAGCTATTGTTGACAAGAATCCTGTTGTAGCCAGTGCTGCCCTTGTCAGTGGAATTCACTTGCTTCAGACCAATCCTGAGATTGTGAGACGATGGAGTAATGAGGTCCAGGAAGCAGTCAATTCCCGAGCTGCTCTTGTACAATTTCATGCACTAGGCTTACTTCACCAGATTCGACAAAATGACCGTTTGGCTGTGAGCAAGCTGGTGTCCAGTTTAACCAGAGGATCAGTTCGTTCACCTTTAGCTCAATGTCTTTTGATCCGTTACACCAGTCAGGTTATACGAGAATCGAGTTTAAATACACAAGCACCTGATCGCCCTTTCTATGACTACCTGGAGGGTTGTTTGCGTCACAAAGCAGAAATGGTCATATTTGAAGCTGCAAGAGCTATAACGGAGTTGAGTGGAGTGACCAGTCGAGAGTTGACTCCAGCTATCACTGTCTTGCAGCTGTTTTTAAGCTCATCAAAGCCAGTTCTCCGGTTTGCAGCTGTTCGTACGCTAAACAAGGTAGCAATGACACATCCATTGGCAGTTACAAACTGCAATATTGATATGGAGAGCCTGATATCAGATCAAAACCGGAGCATAGCCACTCTGGCTATTACTACACTGTTGAAAACAGGAAATGAGTCGAGTGTGGATCGTTTGATGAAGCAAATCACGAATTTTATGTCAGATATAGCGGATGAGTTCAAGATTGTTGTTGTAGAAGCTATTCGATCTCTGTGCTTAAAGTTCCCACAGAAGTATCGAACACTAATGAACTTTCTAAGTAATATACTTAGAGAAGAAGGTGGATTTGAATATAAGAAAGCTATTGTGGACTCTATTCTTATTCTCATTCGAGATATCCCAGAAGCAAAAGAAAGTGGCTTGTCTCATCTTTGTGAATTCATTGAAGATTGTGAATTTACTTATCTTTCTACACAAATTCTTCATTTTCTTGGTAATGAAGGACCAAAGACCGCAGATCCTAGCAAGTATATTCGTTACATTTATAATCGAGTTATTCTTGAAAATGCAACGGTTAGGGCAAGTGCTGTAAGTGCACTAGCAAAGTTTGGGGCACTGGTTGAGTCTCTAAAGCCTCGCATATTTGTATTGTTGCGGCGGTGTCTCTTTGACAATGACGATGAGGTTCGGGACCGAGCAACACTTTACCTAAATGCTCTTGGTGGTGATGTTTCTTCTGATAATGATGGAAGGGATTTGAAAGAGTTCATTTATGGTACCTTACACTTGCCACTAGTTAACCTTGAAGCAAGTTTACAGGCTTATGAGGCTAGCGAAGAACCTTTCAACCTGTCTGCTGTTCCAAAAGAGGTTAAATCACAGCCCTTGGCAGAGAAGAAAGCCCCTGGCAAAAAGGCAGCAGCAACAAATGTTGGGCCCACTACTGTCACTTCAATTGGAGAAACATATGAAAAATTACTCGCCTCAATCCCTGAGTTTTCAGAATTTGGAAAACTTTTCAAGTCTTCCCCACCTGTGGAGCTGACTGAGGCAGAGACAGAATATGCAGTGAACGTTGTGAAGCACATATTTTCTAACCATGTTGTGCTCCAGTATAACTGCACAAACACTATACCAGAACAAGTTTTGGAAAATGTTCATGTAATAGTAGATGCATCCGAGGCAGAAGAATTTTCTGAAGTGGTATCTAAACCTCTAAAATCATTGTCTTATGACTCACCCGGACAGACTTTTGTGGCATTTGAAAAACCAGAAGGAGCTTTGTCTACTGGAAAATTTTCAAATATGCTGAAATTTGTTGTGAAGGAGGTTGATCCTGCTACTGGTGATGTAGAAGAGGAGGGAGTTGAAGATGAATATCAACTTGAGGACCTAGAGGTGACTCCAGCTGATTACATATTGAAGGTTGGAGTTTCAAATTTCAAAAATGCGTGGGAGTCCTTAGGGGCAGACTTTGAACGTGTTGATGAGTATGGTCTTGGTGTGAGGGATAGCTTGTCAGAGGCTGTACAGGCAGTAATCAGTCTTCTTGGAATGCAGGCTTGTGAGGGTACTGATGTTGTCTCAAGCAATTCACGTTCACACACTTGCCTATTGGCTGGTAGATTCATTGGCAATGTTCAAGTACTAGTTAGACTGTCGTTTGGCATTGATGGACCTAAACAAGTTGCTATGAAGCTTGCAGTGCGGTCGGAAGACCAATTTGTAAGTGATGCCATACATGAAATTGTTGCTAATGGCTAAGGGTGCAGATATCTTTCATCATTCCAAGCCGTTGGTTGATGAAGAAAATGCAAATACATTTGCTCTATCTGGTAGATATTTCCACTACCATATCGATTTTCCATAGTGTGCTAACTTAAGCACCTCCCCGAGAATATGCTTGTAGTGCGAATCATGCATTTTATTTCTGAGTTTATCCCAAATGGTGTTTCAAATAACCTGTGGAGGGCAGGTTAAAGCTATAGCTTCTTAGTACTTATTGATTCGTTTCATTTATGTTTTCCTTT

Ace file of the UniGene biog3_v1.0_unigene6061 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13279	103/104
SustainPine v2.0	sp_v2.0_unigene35234	1/104

Source	Descriptions	Term	Type	Identity
AutoFact	Coatomer subunit gamma (Fragment) n=4 Tax=rosids RepID=D7TQ06_VITVI	-	-	82%
FL-Next	sp=Coatomer subunit gamma-2; Oryza sativa subsp. japonica (Rice).	-	-	82%
Blast2go	coatomer subunit gamma	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	90%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	90%
Blast2go	clathrin binding	GO:0030276	Molecular Function	90%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	COPI vesicle coat	GO:0030126	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain	IPR015873	-	-
Sma3	Coatomer gamma subunit	IPR017106	-	-
Sma3	Coatomer, gamma subunit , appendage	IPR014863	-	-
Sma3	Coatomer, gamma subunit, appendage, Ig-like subdomain	IPR013040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6Z382

Fln msg: your sequence is shorter than subject: 797 - 889

Fln protein: MFIKELSPSANEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGALLGQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVRRWSNEVQEAVNSRAALVQFHALGLLHQIRQNDRLAVSKLVSSLTRGSVRSPLAQCLLIRYTSQVIRESSLNTQAPDRPFYDYLEGCLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPQKYRTLMNFLSNILREEGGFEYKKAIVDSILILIRDIPEAKESGLSHLCEFIEDCEFTYLSTQILHFLGNEGPKTADPSKYIRYIYNRVILENATVRASAVSALAKFGALVESLKPRIFVLLRRCLFDNDDEVRDRATLYLNALGGDVSSDNDGRDLKEFIYGTLHLPLVNLEASLQAYEASEEPFNLSAVPKEVKSQPLAEKKAPGKKAAATNVGPTTVTSIGETYEKLLASIPEFSEFGKLFKSSPPVELTEAETEYAVNVVKHIFSNHVVLQYNCTNTIPEQVLENVHVIVDASEAEEFSEVVSKPLKSLSYDSPGQTFVAFEKPEGALSTGKFSNMLKFVVKEVDPATGDVEEEGVEDEYQLEDLEVTPADYILKVGVSNFKNAWESLGADFERVDEYGLGVRDSLSEAVQAVISLLGMQACEGTDVVSSNSRSHTCLLAGRFIGNVQVLVRLSFGIDGPKQVAMKLAVRSEDQFVSDAIHEIVANG*

Protein Length: 798

Fln nts: AATGTTCATCAAGGAGCTTTCTCCTTCTGCCAATGAGGTTATTATTGTGACAAGTTCATTAATGAAAGACATGAATAGCAAGACAGATATGTATCGGGCCAATGCAATACGAGTTTTATGCAGGATCACAGATGGGGCCTTGTTGGGTCAGATTGAAAGATATCTTAAACAAGCTATTGTTGACAAGAATCCTGTTGTAGCCAGTGCTGCCCTTGTCAGTGGAATTCACTTGCTTCAGACCAATCCTGAGATTGTGAGACGATGGAGTAATGAGGTCCAGGAAGCAGTCAATTCCCGAGCTGCTCTTGTACAATTTCATGCACTAGGCTTACTTCACCAGATTCGACAAAATGACCGTTTGGCTGTGAGCAAGCTGGTGTCCAGTTTAACCAGAGGATCAGTTCGTTCACCTTTAGCTCAATGTCTTTTGATCCGTTACACCAGTCAGGTTATACGAGAATCGAGTTTAAATACACAAGCACCTGATCGCCCTTTCTATGACTACCTGGAGGGTTGTTTGCGTCACAAAGCAGAAATGGTCATATTTGAAGCTGCAAGAGCTATAACGGAGTTGAGTGGAGTGACCAGTCGAGAGTTGACTCCAGCTATCACTGTCTTGCAGCTGTTTTTAAGCTCATCAAAGCCAGTTCTCCGGTTTGCAGCTGTTCGTACGCTAAACAAGGTAGCAATGACACATCCATTGGCAGTTACAAACTGCAATATTGATATGGAGAGCCTGATATCAGATCAAAACCGGAGCATAGCCACTCTGGCTATTACTACACTGTTGAAAACAGGAAATGAGTCGAGTGTGGATCGTTTGATGAAGCAAATCACGAATTTTATGTCAGATATAGCGGATGAGTTCAAGATTGTTGTTGTAGAAGCTATTCGATCTCTGTGCTTAAAGTTCCCACAGAAGTATCGAACACTAATGAACTTTCTAAGTAATATACTTAGAGAAGAAGGTGGATTTGAATATAAGAAAGCTATTGTGGACTCTATTCTTATTCTCATTCGAGATATCCCAGAAGCAAAAGAAAGTGGCTTGTCTCATCTTTGTGAATTCATTGAAGATTGTGAATTTACTTATCTTTCTACACAAATTCTTCATTTTCTTGGTAATGAAGGACCAAAGACCGCAGATCCTAGCAAGTATATTCGTTACATTTATAATCGAGTTATTCTTGAAAATGCAACGGTTAGGGCAAGTGCTGTAAGTGCACTAGCAAAGTTTGGGGCACTGGTTGAGTCTCTAAAGCCTCGCATATTTGTATTGTTGCGGCGGTGTCTCTTTGACAATGACGATGAGGTTCGGGACCGAGCAACACTTTACCTAAATGCTCTTGGTGGTGATGTTTCTTCTGATAATGATGGAAGGGATTTGAAAGAGTTCATTTATGGTACCTTACACTTGCCACTAGTTAACCTTGAAGCAAGTTTACAGGCTTATGAGGCTAGCGAAGAACCTTTCAACCTGTCTGCTGTTCCAAAAGAGGTTAAATCACAGCCCTTGGCAGAGAAGAAAGCCCCTGGCAAAAAGGCAGCAGCAACAAATGTTGGGCCCACTACTGTCACTTCAATTGGAGAAACATATGAAAAATTACTCGCCTCAATCCCTGAGTTTTCAGAATTTGGAAAACTTTTCAAGTCTTCCCCACCTGTGGAGCTGACTGAGGCAGAGACAGAATATGCAGTGAACGTTGTGAAGCACATATTTTCTAACCATGTTGTGCTCCAGTATAACTGCACAAACACTATACCAGAACAAGTTTTGGAAAATGTTCATGTAATAGTAGATGCATCCGAGGCAGAAGAATTTTCTGAAGTGGTATCTAAACCTCTAAAATCATTGTCTTATGACTCACCCGGACAGACTTTTGTGGCATTTGAAAAACCAGAAGGAGCTTTGTCTACTGGAAAATTTTCAAATATGCTGAAATTTGTTGTGAAGGAGGTTGATCCTGCTACTGGTGATGTAGAAGAGGAGGGAGTTGAAGATGAATATCAACTTGAGGACCTAGAGGTGACTCCAGCTGATTACATATTGAAGGTTGGAGTTTCAAATTTCAAAAATGCGTGGGAGTCCTTAGGGGCAGACTTTGAACGTGTTGATGAGTATGGTCTTGGTGTGAGGGATAGCTTGTCAGAGGCTGTACAGGCAGTAATCAGTCTTCTTGGAATGCAGGCTTGTGAGGGTACTGATGTTGTCTCAAGCAATTCACGTTCACACACTTGCCTATTGGCTGGTAGATTCATTGGCAATGTTCAAGTACTAGTTAGACTGTCGTTTGGCATTGATGGACCTAAACAAGTTGCTATGAAGCTTGCAGTGCGGTCGGAAGACCAATTTGTAAGTGATGCCATACATGAAATTGTTGCTAATGGCTAA___GGGTGCAGATATCTTTCATCATTCCAAGCCGTTGGTTGATGAAGAAAATGCAAATACATTTGCTCTATCTGGTAGATATTTCCACTACCATATCGATTTTCCATAGTGTGCTAACTTAAGCACCTCCCCGAGAATATGCTTGTAGTGCGAATCATGCATTTTATTTCTGAGTTTATCCCAAATGGTGTTTCAAATAACCTGTGGAGGGCAGGTTAAAGCTATAGCTTCTTAGTACTTATTGATTCGTTTCATTTATGTTTTCCTTT

Fln Alignment:

Contig6061___MFIKELSPSANEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGALLGQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVRRWSNEVQEAVNSRAALVQFHALGLLHQIRQNDRLAVSKLVSSLTRGSVRSPLAQCLLIRYTSQVIRESSLNTQAPDRPFYDYLEGCLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPLAVTNCNIDMESLISDQNRSXXXXXXXXXLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPQKYRTLMNFLSNILREEGGFEYKKAIVDSILILIRDIPEAKESGLSHLCEFIEDCEFTYLSTQILHFLGNEGPKTADPSKYIRYIYNRVILENATVRASAVSALAKFGALVESLKPRIFVLLRRCLFDNDDEVRDRATLYLNALGGDVSSDNDGRDLKEFIYGTLHLPLVNLEASLQAYEASEEPFNLSAVPKEVKSQPLXXXXXXXXXXXATNVGPTT-----VTSIGETYEKLLASIPEFSEFGKLFKSSPPVELTEAETEYAVNVVKHIFSNHVVLQYNCTNTIPEQVLENVHVIVDXXXXXXXXXXXSKPLKSLSYDSPGQTFVAFEKPEGALSTGKFSNMLKFVVKEVDPATXXXXXXXXXXEYQLEDLEVTPADYILKVGVSNFKNAWESLGADFERVDEYGLGVRDSLSEAVQAVISLLGMQACEGTDVVSSNSRSHTCLLAGRFIGNVQVLVRLSFGIDGPKQVAMKLAVRSEDQFVSDAIHEIVANG
Q6Z382_________________LMIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIRYIYNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDEVRDRATLYLKLLGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQNYEPSEAPFDISSVSLETKSQPLAEKKTTGKKP----TGPASALSGPVPTVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVNVVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTFVAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGVSNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCLLSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
1157	16			83	0.994512
1158		16		83	0.994512
1160	83			16	0.994512
1161		83		16	0.994512
1204	16	83			0.994512
1205	16			83	0.994512
1206		83		16	0.994512
1207	83		16		0.994512
1278		83		16	0.994512
1393	20		80		0.995493
1397			80	20	0.995493
1398			80	20	0.995493
1559	16		83		0.994512
1560		16		83	0.994512
1562			83	16	0.994512
1563	83			16	0.994512
1600	80			20	0.995493
1601	80			20	0.995493
1651	85		14		0.993533
1652	85			14	0.993533
1675	14	85			0.993533
1676	14			85	0.993533
1678	85		14		0.993533
1735	10		90		0.90298
1738	90			10	0.90298
1752	11			88	0.923564
1786	11	88			0.923564
1787	88			11	0.923564
1788	88		11		0.923564
1805	10			90	0.90298
1808	90		10		0.90298
1846		90		10	0.90298
2001			90	10	0.90298
2100	14		85		0.993533
2101	14	85			0.993533
2103		85	14		0.993533
2149	20	80			0.995493
2150		80		20	0.995493
2257	16		83		0.994512
2258	83	16			0.994512
2260	14	71		14	0.984337
2313	16			16	0.988813
2314		16		83	0.994512
2315	16		83		0.994512
2317		83		16	0.994512
2349	16			83	0.994512
2350		16		83	0.994512
2351	16		83		0.994512
2353	83			16	0.994512
2423	16			83	0.994512
2426			83	16	0.994512
2577	16			83	0.994512
2578			83	16	0.994512
2603	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain